Mercurial > repos > immuneml > immuneml_tools
changeset 1:08042588bd02 draft
"planemo upload commit 2fed2858d4044a3897a93a5604223d1d183ceac0-dirty"
| author | immuneml |
|---|---|
| date | Thu, 01 Jul 2021 13:37:27 +0000 |
| parents | 629e7e403e19 |
| children | 9bf78cb6b91d |
| files | README.rst |
| diffstat | 1 files changed, 20 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Thu Jul 01 13:37:27 2021 +0000 @@ -0,0 +1,20 @@ +Galaxy tool wrappers for immuneML. +================================== + +Installation +============ +You will need to define a new datatype, which is done as follows: + +1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set + +``datatypes_config_file: datatypes_conf.xml`` + +2. Make ``datatypes_conf.xml`` by copying ``datatypes_conf.xml.sample`` unless a ``datatypes_config_file`` was already defined. +3. Add the following line to your ``datatypes_config_file``: + +``<datatype extension="iml_dataset" type="galaxy.datatypes.text:Html" subclass="True"/>`` +The line has to be inside ``<registration>`` along with the other datatypes. + +The immuneML conda package +========================== +Galaxy will need to install the immuneML conda package. This conda installation typically takes several minutes.