Mercurial > repos > in_silico > cravat_annotate_mutations

diff cravat_submit/cravat_submit.xml @ 21:94fdd28c0dbb draft

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author in_silico
date Wed, 27 Jun 2018 17:53:14 -0400
parents a46b42bda5d7
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cravat_submit/cravat_submit.xml	Wed Jun 27 17:53:14 2018 -0400
@@ -0,0 +1,34 @@
+<tool id="cravat_submit" name="CRAVAT Submit, Check, and Retrieve" version="0.1.0">
+    <description>Submits, checks for, and retrieves data for cancer annotation</description>
+  <command interpreter="python">cravat_submit.py $input $dropdown $output</command>
+  
+  
+  <inputs>
+  
+    <param format="tabular" name="input" type="data" label="Source file"> </param>
+    <param format="tabular" name="dropdown" type="select" label="Analysis Program">
+      <option value="None">None</option>
+      <option value="VEST">VEST</option>
+      <option value="CHASM">CHASM</option>
+      <option value="VEST;CHASM">VEST and CHASM</option>
+    </param>
+    
+    
+  </inputs>
+  
+  <outputs>
+    <data format="tabular" name="output" />
+  </outputs>
+
+  <tests>
+    <test>
+      <param name="input" value="fa_gc_content_input.fa"/>
+      <output name="out_file1" file="fa_gc_content_output.txt"/>
+    </test>
+  </tests>
+
+  <help>
+ This tool submits, checks for, and retrieves data for cancer annotation.
+  </help>
+
+</tool>