Mercurial > repos > in_silico > cravat_annotate_mutations
diff cravat_convert/base_converter.py @ 27:a7e641d146f5 draft
Uploaded
author | in_silico |
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date | Wed, 18 Jul 2018 10:25:44 -0400 |
parents | 4b860b1f92fa |
children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cravat_convert/base_converter.py Wed Jul 18 10:25:44 2018 -0400 @@ -0,0 +1,22 @@ +class BaseConverter(object): + def __init__(self): + self.format_name = None + def check_format(self,*args,**kwargs): + err_msg = 'Converter for %s format has no method check_format' %\ + self.format_name + raise NotImplementedError(err_msg) + def setup(self,*args,**kwargs): + err_msg = 'Converter for %s format has no method setup' %\ + self.format_name + raise NotImplementedError(err_msg) + def convert_line(self,*args,**kwargs): + err_msg = 'Converter for %s format has no method convert_line' %\ + self.format_name + raise NotImplementedError(err_msg) + + +class BadFormatError(Exception): + def __init__(self, message, errors=None): + super(BadFormatError, self).__init__(message) + # Support for custom error codes, if added later + self.errors = errors \ No newline at end of file