Mercurial > repos > in_silico > cravat_annotate_mutations

view cravat_annotate/cravat_annotate.xml @ 10:152227fa7851 draft

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author in_silico
date Tue, 12 Jun 2018 11:04:25 -0400
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<tool id="cravat_query" name="CRAVAT Query" version="1.0.0">
    <description>Queries CRAVAT for cancer annotation</description>
  <command interpreter="python">cravat_annotate.py $input $output</command>
  
  <inputs>
    <param format="tabular" name="input" type="data" label="Source file"/>
  </inputs>
  
  <outputs>
    <data format="tabular" name="output" />
  </outputs>

  <tests>
    <test>
      <param name="input" value="input_call.txt"/>
      <output name="output" file="Galaxy23-[CRAVAT_Query_on_data_22].tabular"/>
    </test>
  </tests>

  <help>
    This tool queries CRAVAT for cancer annotation.
  </help>

</tool>