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view cravat_annotate/cravat_annotate.xml @ 26:326aadaa3dd9 draft

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author in_silico
date Wed, 18 Jul 2018 10:18:43 -0400
parents c5b3d80c43e6
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<tool id="cravat_query" name="CRAVAT Query" version="1.0.0">
    <description>Queries CRAVAT for cancer annotation</description>
  <command interpreter="python">cravat_annotate.py -i $input -o $output</command>
  
  <inputs>
    <param format="tabular" name="input" type="data" label="Source file"/>
  </inputs>
  
  <outputs>
    <data format="tabular" name="output" />
  </outputs>

  <tests>
    <test>
      <param name="input" value="input_call.txt"/>
      <output name="output" file="Galaxy23-[CRAVAT_Query_on_data_22].tabular"/>
    </test>
  </tests>

  <help>
    This tool queries CRAVAT for cancer annotation.
  </help>

</tool>