annotate cravat_submit/cravat_submit.xml @ 21:67a13940d0bf draft default tip

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<tool id="cravat_submit" name="CRAVAT Submit, Check, and Retrieve" version="0.1.0">
    <description>Submits, checks for, and retrieves data for cancer annotation</description>
  <command interpreter="python">cravat_submit.py --input $input --output $output --analysis $dropdown</command>
  
  
  <inputs>
  
    <param format="tabular" name="input" type="data" label="Source file"> </param>
    <param format="tabular" name="dropdown" type="select" label="Analysis Program">
      <option value="None">None</option>
      <option value="VEST">VEST</option>
      <option value="CHASM">CHASM</option>
      <option value="VEST;CHASM">VEST and CHASM</option>
    </param>
    
    
  </inputs>
  
  <outputs>
    <data format="tabular" name="output" />
  </outputs>

  <tests>
    <test>
      <param name="input" value="fa_gc_content_input.fa"/>
      <output name="out_file1" file="fa_gc_content_output.txt"/>
    </test>
  </tests>

  <help>
 This tool submits, checks for, and retrieves data for cancer annotation.
  </help>

</tool>