Mercurial > repos > in_silico > cravat_score_and_annotate
comparison cravat_convert/base_converter.py @ 16:65d45265a31b draft
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author | in_silico |
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date | Thu, 16 Aug 2018 15:06:21 -0400 |
parents | 18982667bd10 |
children |
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15:0835042eb731 | 16:65d45265a31b |
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1 class BaseConverter(object): | |
2 def __init__(self): | |
3 self.format_name = None | |
4 def check_format(self,*args,**kwargs): | |
5 err_msg = 'Converter for %s format has no method check_format' %\ | |
6 self.format_name | |
7 raise NotImplementedError(err_msg) | |
8 def setup(self,*args,**kwargs): | |
9 err_msg = 'Converter for %s format has no method setup' %\ | |
10 self.format_name | |
11 raise NotImplementedError(err_msg) | |
12 def convert_line(self,*args,**kwargs): | |
13 err_msg = 'Converter for %s format has no method convert_line' %\ | |
14 self.format_name | |
15 raise NotImplementedError(err_msg) | |
16 | |
17 | |
18 class BadFormatError(Exception): | |
19 def __init__(self, message, errors=None): | |
20 super(BadFormatError, self).__init__(message) | |
21 # Support for custom error codes, if added later | |
22 self.errors = errors |