view cravat_submit/cravat_submit.xml @ 19:275d45d14350 draft

author in_silico
date Thu, 16 Aug 2018 15:10:07 -0400
parents 9985359fa7ff
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<tool id="cravat_submit" name="CRAVAT Submit, Check, and Retrieve" version="0.1.0">
    <description>Submits, checks for, and retrieves data for cancer annotation</description>
  <command interpreter="python"> --input $input --output $output --analysis $dropdown</command>
    <param format="tabular" name="input" type="data" label="Source file"> </param>
    <param format="tabular" name="dropdown" type="select" label="Analysis Program">
      <option value="None">None</option>
      <option value="VEST">VEST</option>
      <option value="CHASM">CHASM</option>
      <option value="VEST;CHASM">VEST and CHASM</option>
    <data format="tabular" name="output" />

      <param name="input" value="fa_gc_content_input.fa"/>
      <output name="out_file1" file="fa_gc_content_output.txt"/>

 This tool submits, checks for, and retrieves data for cancer annotation.