Mercurial > repos > insilico-bob > mean_center_matrix
changeset 2:621af44576a2 draft
Uploaded
| author | insilico-bob |
|---|---|
| date | Thu, 26 Jan 2017 12:14:01 -0500 |
| parents | e7e80f706eb6 |
| children | 9c8c6c3ae359 |
| files | ._. ._.DS_Store ._meancentermatrix.py ._meancentermatrix.xml ._test-data meancentermatrix.py meancentermatrix.xml meancentermatrix.zip test-data/._.DS_Store test-data/._MeanCenterMatrix-in.txt test-data/._MeanCenterMatrix-out.txt test-data/MeanCenterMatrix-in.txt test-data/MeanCenterMatrix-out.txt |
| diffstat | 13 files changed, 572 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/meancentermatrix.py Thu Jan 26 12:14:01 2017 -0500 @@ -0,0 +1,134 @@ +#!/usr/bin/env python + +# created by Robert E. Brown all rights reserved. Use by signed written agreement only. 2014Jan03. +#========================= +#SMean Center each columns in Matrix v0 +#======================================== + +# by Bob Brown 09 Feb 2016 + + +import sys +import traceback +#from scipy.stats.mstats import rankdata +#from scipy.stats import norm +#from scipy import * +#from numpy +#import math ##v33 for the log function + + +###================ Galaxyy mods below v34a v0 ============ +def main(): + + + # check the command line + sys.stdout.write(' starting set invalid values to mean value. Arguments=') + sys.stdout.write(str(sys.argv[1:])+'\n') + #outFile = "/Users/bobbrown/Desktop/bobMatrixOut.txt" + + try: + inFile = sys.argv[1] + outFile = sys.argv[2] + # colDelimiter = sys.argv[3] + + #print "sys arguments=", sys.argv[1:] + colDelimiter = '\t' + + Matrix = [] + #infile = "/Users/bobbrown/Desktop/bobINmatrix.txt" + fin = open( inFile, 'rU') + indata = fin.read() + # split the file into lines + #print 'fin', indata[1:] + a = indata[:].split('\n') + cnt = -1 + for i in a: # for each row from matrix + tmp = i.replace('\n','') ##v22 fix /n + b = tmp.split(colDelimiter) + tmp2 = [] + for j in b: + tmp2.append(j) + Matrix.append(tmp2) + + #find text in numeric cells and convert to + badvalue = 'false' + #use header row for correct number of rows + numrows = len(Matrix) + numcols = len(Matrix[0]) + for rows in range(1, numrows ): + for cols in range(1,numcols): + if numcols <= len(Matrix[rows] ): + try: + Matrix[rows][cols] = float(Matrix[rows][cols]) # if non real number will cause error + except: + #sys.stdout.write('Illegal Value '+str(Matrix[i][cols])+ ' in row and column '+rows +cols +'\n' ) + print('Illegal value at row, column - ', rows+1,cols+1 ) + Matrix[rows][cols] = 99999 # temporarily set to number then later to the mean value + #badvalue = 'true' + + else: + if rows < numrows -1: print('skip row', rows+1, 'not enough columns') + #if i == numrows-1: numrows = numrows -1 + + + + #if non valid values above then change them to the COLUMN Mean value + if badvalue == 'false' and numrows >1 and numcols > 1: + for rows in range(1, numrows ): +# skip = 0 + top = 0 +# print (str(Matrix[1:][i])) +# print (str(Matrix[i][1:])) + if len(Matrix[rows]) > 1: + for cols in range(1,numcols): + try: + top =top + float(Matrix[rows][cols]) + except: + junk = 0 + + meanN = top / (numcols -1) + + for cols in range(1,numcols): + try: + Matrix[rows][cols] = str('%.3f' % (float(Matrix[rows][cols]) -meanN)) + #temp = Matrix[k][i] + except: + junk = 0 + + #print('For row', rows+1,' the mean =', meanN ) + + else: + print( 'bad value or insufficient columns or rows ' , badvalue, numcols, numrows) + + # have mean so go back and set bad values to mean + fout = open( outFile, 'w') + + for rows in range(0, numrows ): + #print('out', str(Matrix[i])) + if len(Matrix[rows])> 2: + try: + for cols in range(0, numcols-1): + fout.write( str(str(Matrix[rows][cols])) +'\t' ) + fout.write( str(str(Matrix[rows][cols]))+'\n' ) + except: junk = 0 + #if (rows < numrows -1 and len(Matrix[cols]) > 1): fout.write( '\n') + #fout.write( '\n') + + + fout.close() + fin.close() + except Exception as e: + print( 'Usage: python MeanCenter failed', e ) + print traceback.format_exc() + sys.exit(-1) + + + +## + print 'Success ', numrows, ' rows mean centered \n' +## + return +## +## + +if __name__ == "__main__": main()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/meancentermatrix.xml Thu Jan 26 12:14:01 2017 -0500 @@ -0,0 +1,18 @@ +<?xml version="1.0" encoding="UTF-8" ?> + <tool id='meancentermatrix' name='meancentermatrix' > + <description>Mean Center Sample N columns and Value X Rows matrix avg based on rows</description> + <command interpreter="python">meancentermatrix.py '$input1' '$outfile' </command> + <inputs> + <param format="text" name="input1" type="data" label="Input Matrix" help="Input tab delimited matrix with a 1st row of Sample IDs and 1st column with labels for values to be mean-centered"/> + </inputs> + <outputs> + <data format="text" name="outfile"/> + </outputs> + <tests> + <test> + <param name='input1' value='test_input.txt' /> + <output name='outfile' file='test_output.txt' /> + </test> + </tests> + <help>This tool mean-centered an array with the row mean value</help> +</tool> \ No newline at end of file
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/MeanCenterMatrix-out.txt Thu Jan 26 12:14:01 2017 -0500 @@ -0,0 +1,1 @@ + TCGA-BR-7851 TCGA-IN-A7NR TCGA-BR-8059 TCGA-BR-7901 TCGA-BR-8297 TCGA-FP-A9TM TCGA-BR-8291 TCGA-SW-A7EA TCGA-VQ-A94T TCGA-VQ-A94U TCGA-VQ-A94R TCGA-BR-8058 TCGA-VQ-A94P TCGA-HF-7136 TCGA-HF-7134 TCGA-HF-7132 TCGA-HF-7133 TCGA-CG-5728 TCGA-D7-8573 TCGA-EQ-8122 TCGA-VQ-A94O TCGA-CG-5726 TCGA-VQ-A8DU TCGA-VQ-A8DT TCGA-D7-5577 TCGA-D7-A6F2 TCGA-D7-A6F0 TCGA-BR-A4CS TCGA-BR-A4J9 TCGA-BR-8289 TCGA-BR-8286 TCGA-BR-8284 TCGA-RD-A8N4 TCGA-BR-7957 TCGA-R5-A7ZR TCGA-RD-A8MW TCGA-RD-A8MV TCGA-MX-A666 TCGA-CD-8536 TCGA-CD-8534 TCGA-CD-8535 TCGA-CD-8532 TCGA-CD-8533 TCGA-CD-8530 TCGA-CD-8531 TCGA-R5-A7ZF TCGA-R5-A7ZE TCGA-R5-A7ZI TCGA-BR-7958 TCGA-R5-A805 TCGA-RD-A7C1 TCGA-BR-A4QI TCGA-BR-7959 TCGA-CD-5799 TCGA-CD-5798 TCGA-HU-8238 TCGA-FP-8099 TCGA-CD-5813 TCGA-VQ-AA6B TCGA-VQ-AA6D TCGA-BR-6456 TCGA-BR-6457 TCGA-BR-6458 TCGA-VQ-AA6I TCGA-VQ-AA6J TCGA-VQ-AA6K TCGA-CG-5732 TCGA-CD-8529 TCGA-CD-8528 TCGA-RD-A8NB TCGA-FP-7998 TCGA-CD-8524 TCGA-CD-8526 TCGA-FP-8210 TCGA-FP-8211 TCGA-FP-A8CX TCGA-RD-A8N9 TCGA-RD-A8N6 TCGA-FP-7916 TCGA-RD-A8N5 TCGA-RD-A8N2 TCGA-RD-A8N0 TCGA-RD-A8N1 TCGA-FP-A4BF TCGA-BR-A4PF TCGA-CD-5804 TCGA-BR-A4PD TCGA-BR-A4PE TCGA-CD-5801 TCGA-CD-5800 TCGA-CD-5803 TCGA-VQ-A924 TCGA-VQ-A925 TCGA-D7-A4YV TCGA-VQ-A927 TCGA-VQ-A922 TCGA-VQ-A923 TCGA-RD-A7BS TCGA-VQ-A928 TCGA-RD-A7BT TCGA-RD-A7BW TCGA-D7-A6EV TCGA-D7-A4YT TCGA-VQ-AA64 TCGA-D7-A4YU TCGA-VQ-AA68 TCGA-VQ-AA69 TCGA-D7-A6EZ TCGA-D7-A6EX TCGA-D7-A6EY TCGA-EQ-A4SO TCGA-BR-8060 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-FP-7735 TCGA-BR-A4IZ TCGA-IN-A6RS TCGA-VQ-A8PX TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-MX-A663 TCGA-BR-6563 TCGA-FP-A4BE TCGA-FP-7829 TCGA-HU-A4GJ TCGA-D7-A4YY TCGA-HU-A4HD TCGA-BR-A4J6 TCGA-HU-A4HB TCGA-HU-A4H5 TCGA-HU-A4H4 TCGA-HU-A4H6 TCGA-HU-A4H0 TCGA-F1-6875 TCGA-F1-6874 TCGA-D7-6518 TCGA-HU-A4H8 TCGA-IN-A7NT TCGA-BR-8364 TCGA-FP-8209 TCGA-BR-8361 TCGA-BR-8362 TCGA-BR-8363 TCGA-HU-A4GH TCGA-F1-6177 TCGA-D7-6822 TCGA-VQ-AA6A TCGA-D7-A4Z0 TCGA-IN-A7NU TCGA-IP-7968 TCGA-F1-A72C TCGA-HU-A4GX TCGA-HU-A4GY TCGA-VQ-AA6F TCGA-R5-A7O7 TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-VQ-AA6G TCGA-HU-A4GT TCGA-HU-A4GU TCGA-D7-6520 TCGA-D7-A748 TCGA-BR-6705 TCGA-BR-6706 TCGA-HU-A4GN TCGA-BR-8077 TCGA-BR-8078 TCGA-HU-A4GC TCGA-HU-A4GD TCGA-HU-A4GF TCGA-D7-A747 TCGA-HF-A5NB TCGA-SW-A7EB TCGA-HU-A4H3 TCGA-HU-A4H2 TCGA-D7-8570 TCGA-D7-8572 TCGA-F1-A448 TCGA-D7-8574 TCGA-D7-8575 TCGA-D7-8576 TCGA-D7-8578 TCGA-D7-8579 TCGA-BR-8081 TCGA-BR-8080 TCGA-VQ-A92D TCGA-D7-5578 TCGA-IN-AB1V TCGA-D7-6519 TCGA-BR-A4J8 TCGA-IN-AB1X TCGA-MX-A5UJ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-MX-A5UG TCGA-BR-A4J7 TCGA-VQ-A91Y TCGA-VQ-A91X TCGA-VQ-A91Z TCGA-VQ-A91U TCGA-D7-A74A TCGA-VQ-A91W TCGA-VQ-A91V TCGA-VQ-A91Q TCGA-VQ-A91S TCGA-FP-8631 TCGA-VQ-A91N TCGA-VQ-A91K TCGA-VQ-A91E TCGA-VQ-A91D TCGA-CG-5734 TCGA-VQ-A91A TCGA-CG-5733 TCGA-CG-5733 DQ571691 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 BC041342 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 TCRAV5.1a 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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-0.291 -0.308 -0.067 -0.299 -0.382 -0.37 -0.247 -0.243 -0.354 0.447 0.776 1.671 -0.304 1.574 -0.022 -0.372 -0.356 0.055 -0.223 -0.38 0.59 -0.045 -0.336 1.397 0.611 -0.363 0.192 -0.177 0.226 0.178 -0.324 -0.14 -0.365 -0.381 -0.311 0.116 -0.357 -0.381 0.579 1.175 -0.346 -0.19 -0.254 1.419 -0.387 -0.388 -0.377 0.018 -0.328 0.113 -0.29 -0.287 2.123 -0.226 -0.186 2.078 -0.066 -0.376 -0.39 -0.39 -0.315 -0.284 -0.119 -0.059 1.422 -0.32 -0.35 1.786 1.392 -0.378 1.452 -0.382 0.205 -0.359 -0.288 -0.322 0.204 -0.286 0.35 -0.29 -0.349 0.217 0.211 -0.254 0.015 -0.382 -0.329 0.865 -0.192 0.072 0.386 -0.011 2.267 0.325 -0.3 0.242 0.049 1.437 0.546 -0.354 -0.379 -0.359 -0.366 -0.375 -0.349 0.338 -0.357 -0.267 -0.353 -0.267 -0.252 -0.368 -0.337 -0.369 -0.279 -0.279 FAM86FP -0.375 0.216 -0.406 -0.491 0.275 -0.022 -0.189 0.241 -0.433 0.258 0.264 -0.165 -0.319 -0.362 0.994 -0.371 -0.178 -0.015 -0.466 -0.379 -0.1 -0.352 -0.486 1.066 -0.547 0.963 0.656 -0.321 -0.394 -0.336 0.483 0.154 0.609 -0.443 -0.179 -0.419 0.014 0.21 -0.242 0.035 -0.447 0.417 0.079 -0.121 -0.225 0.026 -0.244 0.223 0.129 -0.243 -0.021 0.473 -0.039 -0.299 -0.381 -0.298 0.217 -0.175 -0.42 0.226 0.227 -0.445 -0.39 -0.329 0.415 1.174 -0.384 -0.106 -0.394 -0.283 -0.337 0.12 0.816 0.252 -0.19 0.192 -0.437 0.586 -0.492 0.022 -0.273 0.352 0.944 0.59 -0.174 -0.184 0.178 -0.369 -0.362 0.129 0.787 1.584 0.926 -0.163 -0.247 -0.296 0.318 -0.183 0.291 -0.347 0.166 -0.448 -0.41 0.523 -0.357 0.023 -0.04 -0.158 0.313 -0.127 -0.15 -0.126 -0.368 -0.038 -0.277 -0.13 -0.407 -0.166 -0.002 0.064 -0.381 0.705 0.264 -0.217 0.302 0.291 -0.165 0.151 -0.279 0.846 -0.278 -0.561 -0.368 -0.168 -0.412 -0.393 0.048 -0.467 -0.148 -0.27 -0.177 -0.147 0.422 -0.402 0.071 0.423 1.096 -0.043 0.327 -0.431 0.007 0.128 -0.22 0.217 -0.21 -0.209 0.038 -0.134 -0.349 -0.1 -0.211 -0.23 -0.251 -0.542 0.329 -0.015 0.087 0.022 -0.103 -0.074 1.518 0.119 0.061 -0.088 0.842 -0.244 -0.297 -0.203 0.339 0.478 0.448 0.233 -0.262 -0.168 -0.33 -0.31 -0.35 0.737 -0.127 0.169 0.341 0.088 -0.089 -0.065 0.244 -0.231 -0.123 -0.024 -0.284 0.785 -0.084 -0.407 -0.134 -0.369 -0.317 -0.014 0.182 0.554 -0.16 0.311 -0.242 -0.15 0.519 0.35 0.083 -0.247 -0.123 -0.123 SAA2-SAA4 -5.346 -5.718 -4.155 -3.356 -5.94 -5.042 -5.252 14.703 -5.961 -5.773 -5.97 -4.716 -5.9 2.441 -4.237 -4.602 -4.685 -5.225 -4.941 1.55 7.255 -4.97 15.751 -4.979 -3.578 -5.578 -4.24 -5.524 -5.989 -5.832 -5.517 -5.796 -5.973 -5.946 2.609 -0.183 3.645 -5.394 -5.963 -5.91 -5.989 -5.616 -5.899 -5.934 -5.972 -4.928 -5.564 604.363 -5.504 -0.419 -2.87 -5.861 -5.62 -3.219 -5.848 -5.783 20.055 -5.701 -5.796 54.955 -5.076 -5.744 -5.712 -4.571 10.134 -1.108 62.012 -5.636 -5.868 -5.926 -5.489 -5.724 -4.728 -5.434 -5.77 -5.49 -5.23 -0.795 -5.744 -5.02 -5.965 -5.256 7.148 -4.788 1.036 1.514 -4.829 2.449 -5.972 -2.048 -5.601 -5.138 -5.706 -6.001 -4.633 -5.848 -5.892 10.031 -5.866 -4.939 33.424 -0.502 -5.352 -5.749 -5.263 -5.715 -5.965 -5.556 -6.001 15.979 -5.609 -6 -5.936 -5.147 -5.321 -6.001 -5.386 10.866 18.214 -5.677 -5.55 -4.716 -0.301 -5.421 -5.9 -5.933 -5.957 -5.137 -4.092 -5.933 9.159 -5.536 -3.984 -4.541 -4.869 -5.895 -4.128 -5.853 -5.939 -4.49 -5.909 -5.739 -5.927 -5.9 -5.668 -5.655 -5.465 -5.76 -4.875 -5.209 23.016 -2.806 -1.846 -5.787 -5.951 -4.347 -4.854 -5.949 -5.854 5.115 0.427 7.983 -4.977 7.931 -3.535 -5.573 -5.972 -5.157 -5.459 -5.998 -2.321 -2.359 -5.918 -5.982 -5.655 -5.996 -5.159 -5.62 -0.876 -3.898 -5.933 0.647 -5.801 -5.86 -3.971 -2.157 -5.668 -5.964 -5.863 -5.53 -5.954 -5.097 -5.966 -5.752 -5.83 -5.521 -5.228 -5.644 -4.995 -5.971 -5.066 -1.673 2.935 -5.725 -5.962 -5.268 -5.561 -5.78 -5.728 7.854 -5.791 -5.955 -5.775 -5.723 -5.608 -5.636 -5.698 -5.698 DQ577476 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 VRTN -0.278 -0.351 -0.374 -0.256 -0.28 0.389 -0.054 -0.344 -0.374 -0.327 0.027 -0.192 -0.369 -0.275 0.273 0.911 -0.342 -0.274 0.462 -0.345 0.291 -0.221 -0.092 0.119 1.205 -0.278 3.238 0.091 -0.285 0.187 -0.32 0.001 -0.369 0.143 0.916 -0.357 -0.294 -0.017 -0.367 -0.293 -0.374 3.421 0.501 -0.347 -0.374 -0.267 -0.363 -0.337 1.445 -0.306 0.771 -0.336 -0.332 -0.248 -0.374 -0.286 4.17 -0.355 -0.333 -0.127 -0.374 -0.323 -0.268 0.642 -0.214 -0.335 -0.043 -0.346 -0.075 -0.326 0.955 -0.23 -0.312 -0.185 -0.352 -0.284 -0.307 0.028 -0.179 -0.374 -0.374 -0.241 -0.165 -0.27 -0.341 0.042 -0.336 0.235 -0.288 0.045 -0.164 3.568 -0.01 -0.351 -0.255 -0.247 0.142 0.013 -0.296 -0.312 -0.278 -0.31 -0.192 -0.351 -0.216 -0.351 -0.374 -0.374 -0.367 -0.264 -0.275 -0.352 -0.325 -0.359 -0.368 -0.374 -0.351 -0.368 -0.32 -0.22 -0.123 0.468 3.14 -0.23 -0.374 -0.374 0.775 -0.329 -0.216 -0.374 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-0.047 0.262 0.495 -0.364 0.874 -0.371 0.255 0.723 -0.923 0.488 1.015 -0.545 -0.179 3.42 0.13 -0.544 0.163 -0.79 0.929 -0.718 0.216 3.832 3.862 0.417 -0.267 -0.447 -0.072 -0.281 -0.077 -0.768 4.039 -0.671 -0.561 0.758 -0.524 -0.656 2.014 0.207 -0.693 -0.708 0.703 -0.92 -0.606 -0.868 1.947 -0.298 -0.826 -0.246 -0.644 0.812 -0.94 -0.24 1.225 -0.724 -0.537 -0.649 -0.221 -0.516 -0.591 1.481 0.047 -0.662 -0.535 2.34 -0.283 -0.869 10.928 -0.527 -0.711 -0.848 3.75 -0.867 -0.038 -0.185 -0.207 -1.039 -0.237 -0.375 -0.162 -0.972 0.418 4.204 -0.453 -0.045 0.163 -0.786 -0.939 -0.758 -0.795 1.256 -0.276 -0.618 -0.622 -0.228 -0.744 0.49 -0.631 -0.735 -0.911 -0.809 -0.786 -0.878 -0.613 -0.006 0.279 0.774 -0.753 -0.406 -0.087 -0.781 -0.608 -0.627 0.958 -0.941 0.708 -0.814 -0.478 0.934 -0.053 -0.244 3.399 -0.045 -0.474 -0.519 0.456 0.607 0.276 -0.997 0.547 -0.679 -0.58 -0.769 -0.867 -0.417 -0.932 1.911 -0.685 -0.281 2.507 -0.275 0.411 -1.009 -1.011 -0.229 -0.732 -0.046 -0.854 -0.58 -0.445 -0.755 -0.461 -0.398 -0.307 -0.829 -0.346 -0.741 0.927 0.927 ANKRD33 -0.061 -0.061 -0.031 1.639 -0.029 -0.061 -0.029 -0.061 -0.061 0.033 -0.06 -0.061 -0.061 0.023 -0.053 -0.061 -0.061 -0.061 -0.056 -0.052 0.144 -0.061 0.06 0.034 -0.061 -0.056 0.04 0.097 -0.054 -0.018 0.006 -0.031 -0.061 -0.046 -0.016 0.021 -0.061 0.139 -0.052 -0.04 -0.057 -0.055 0.128 -0.048 -0.061 -0.061 -0.011 -0.061 -0.061 -0.061 0.241 -0.061 -0.03 -0.034 -0.061 -0.042 0.02 -0.044 -0.037 0.299 0.077 -0.061 -0.061 -0.061 0.32 -0.046 -0.022 -0.011 0.149 -0.061 -0.061 -0.032 -0.007 -0.046 -0.051 0.001 -0.003 -0.01 -0.057 0.606 -0.061 -0.019 -0.054 0.048 0.163 -0.049 -0.028 -0.061 -0.061 1.093 -0.017 -0.054 0.299 -0.054 -0.056 0.23 -0.052 0.167 -0.043 0.009 0.036 -0.061 -0.061 -0.049 -0.061 -0.061 -0.061 -0.057 -0.058 -0.05 -0.043 -0.061 -0.054 -0.059 -0.061 -0.052 -0.061 -0.061 0.048 -0.059 -0.034 -0.034 0.115 -0.061 -0.061 -0.055 -0.052 -0.061 0.049 -0.061 0.748 -0.029 -0.061 -0.028 -0.061 -0.021 -0.007 -0.04 -0.061 0.048 -0.061 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-0.026 -0.177 0.281 0.037 -0.03 0.02 -0.018 -0.122 0.054 0.065 -0.15 -0.029 0.035 0.128 -0.164 -0.242 -0.18 -0.037 -0.009 -0.005 -0.033 -0.091 -0.108 -0.217 -0.105 0.101 0.333 -0.19 0.103 -0.168 -0.151 -0.159 -0.174 -0.101 2.292 0.187 -0.045 -0.032 -0.15 -0.087 -0.009 -0.084 0.252 -0.012 0.413 0.181 0.168 -0.006 0.155 -0.233 -0.098 -0.041 -0.059 0.068 -0.198 -0.075 0.024 -0.008 0.368 0.146 -0.112 0.084 0.069 0.122 0.035 0.003 -0.046 -0.014 0.004 -0.037 -0.091 0.018 -0.079 0.45 -0.111 -0.123 -0.03 -0.112 -0.288 0.13 -0.21 -0.21 MIR323A -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 0.01 -0.027 -0.027 0.387 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 1.179 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 0.963 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.023 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 0.409 -0.027 0.862 -0.027 1.226 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 0.16 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 0.035 -0.027 0.376 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 -0.027 NELL1 -0.054 -0.151 -0.169 -0.14 0.161 0.015 -0.164 -0.169 -0.169 -0.127 -0.161 0.31 0.386 0.303 0.007 -0.054 0.031 -0.06 -0.142 -0.099 -0.008 -0.084 0.005 0.48 -0.085 -0.13 -0.128 -0.166 -0.061 -0.169 0.01 -0.124 0.331 -0.133 0.029 -0.169 -0.148 0.081 -0.147 -0.083 -0.168 -0.104 -0.126 0.367 -0.169 -0.169 -0.169 -0.169 -0.151 -0.082 0.277 -0.159 -0.155 -0.114 -0.159 -0.063 -0.161 -0.169 -0.114 -0.164 -0.092 0.064 0.196 -0.052 -0.163 -0.141 0.006 -0.111 -0.164 -0.151 -0.162 -0.164 -0.154 -0.073 -0.095 0.024 -0.154 0.167 -0.156 -0.05 -0.05 0.513 -0.085 -0.169 -0.139 -0.169 0.293 -0.149 -0.071 -0.092 -0.15 -0.149 -0.027 -0.163 0.675 -0.017 -0.062 0.127 1.909 -0.134 0.074 -0.165 0.075 -0.134 -0.162 -0.127 0.048 -0.169 -0.063 -0.169 0.186 0.37 -0.139 0.078 -0.164 0.026 0.822 -0.136 -0.1 0.356 -0.169 -0.169 -0.079 0.261 -0.163 0.271 0.227 -0.169 -0.128 -0.16 0.13 -0.09 -0.16 0.742 -0.129 -0.081 -0.162 -0.14 -0.093 -0.169 -0.035 -0.071 -0.169 -0.12 -0.142 0.116 -0.169 0.095 0.062 0.59 -0.12 -0.072 -0.127 -0.078 -0.073 -0.122 -0.119 0.423 -0.159 0.003 -0.169 -0.169 -0.169 -0.169 -0.143 -0.14 0.615 -0.09 -0.169 0.144 0.184 -0.169 0.013 -0.163 0.204 -0.165 -0.055 -0.169 0.207 -0.024 -0.152 0.123 -0.003 -0.055 -0.157 -0.134 -0.143 -0.169 0.121 -0.039 -0.116 -0.099 -0.026 -0.131 -0.091 5.619 -0.145 -0.034 0.691 -0.163 -0.091 -0.135 -0.169 -0.111 -0.164 -0.128 0.043 -0.06 -0.147 -0.116 -0.007 -0.154 -0.016 -0.169 -0.104 -0.116 -0.053 -0.053 OR4C46 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 0.013 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 0.011 -0.008 -0.008 -0.008 -0.008 -0.008 0.295 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 -0.008 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-0.008 -0.008 -0.008 -0.008 -0.008 HERC2P9 -0.431 0.429 -0.91 -0.472 -0.167 2.172 -0.159 0.137 -0.032 1.244 2.136 -0.521 1.238 -0.576 -0.58 -0.664 -0.786 -0.791 0.179 -0.439 1.245 -0.852 1.406 0.135 -0.738 1.297 -0.414 1.222 -0.482 -0.57 -0.232 -0.797 1.584 -0.694 -0.059 -0.42 1.502 1.604 -1.145 -0.08 -0.545 -0.929 -0.276 0.277 -0.672 -1.066 -0.099 0.694 -0.332 0.362 -0.428 -0.633 0.175 -1.152 -1.093 -1.241 1.159 -1.158 0.4 0.618 -0.627 -1.358 -0.944 0.879 0.592 0.456 -1.167 -0.453 -1.105 0.685 -0.568 -0.43 -0.861 -0.182 -0.729 -0.266 0.202 1.86 -0.788 0.69 0.738 0.924 0.938 0.122 1.403 -1.239 -0.029 -0.377 -1.116 -0.893 -1.163 1.409 1.818 -0.431 0.758 0.28 2.785 0.05 -0.292 0.574 1.191 0.046 0.775 0.926 0.523 -0.64 1.1 0.219 0.486 0.156 -0.427 -0.361 -0.67 0.711 -0.405 -0.823 -0.798 -0.677 0.576 -0.651 -0.954 -1.351 0.564 -0.723 -0.109 0.024 -0.057 -0.011 -0.73 -0.482 -0.787 -0.615 0.395 -0.542 0.094 -0.123 -0.754 -1.289 0.955 -0.101 -0.343 0.536 0.726 -0.525 -0.404 0.548 2.144 0.197 0.024 0.388 1.558 -0.695 0.142 -0.269 -0.121 -0.359 -0.381 -0.669 -0.223 0.009 -0.924 -0.736 -1.272 -0.837 -0.819 -0.454 -0.184 -0.277 -0.527 0.221 1.017 -0.093 0.632 -0.209 0.679 0.333 0.249 -0.232 -0.298 0.02 0.415 -0.424 -0.347 -0.558 0.418 -0.087 -0.012 -0.375 -0.771 -0.135 -0.844 0.951 0.911 0.807 -0.015 0.735 -0.633 -0.681 0.316 0.784 0.846 1.054 0.453 -0.544 0.101 1.011 0.761 2.211 1.047 0.924 -1.045 -0.25 1.138 0.845 -1.071 0.323 -1.094 -1.094 GSG1 -0.027 -0.034 -0.031 -0.04 -0.029 -0.008 -0.009 -0.04 -0.032 0.032 -0.031 -0.03 -0.035 0.046 -0.038 -0.04 -0.034 -0.026 0.005 -0.033 -0.02 -0.04 0.027 0.051 -0.015 -0.04 0.693 -0.037 -0.04 -0.025 0.137 0.041 0.036 -0.033 -0.036 -0.034 -0.029 -0.018 -0.035 -0.035 -0.026 -0.035 0.023 0.012 -0.034 -0.031 -0.018 -0.04 -0.04 -0.037 0.573 -0.031 -0.034 -0.04 -0.04 0.173 -0.023 -0.013 -0.04 -0.04 -0.035 0.062 -0.031 -0.038 -0.034 -0.015 -0.04 -0.025 -0.03 -0.035 -0.04 0.004 -0.006 -0.04 -0.04 -0.037 -0.022 -0.017 -0.006 -0.04 -0.031 -0.04 -0.031 0.014 -0.04 -0.032 -0.04 -0.03 -0.04 -0.003 -0.031 -0.037 -0.032 -0.033 -0.04 0.121 -0.028 0.155 -0.023 -0.04 -0.005 -0.04 -0.033 -0.034 -0.038 -0.035 -0.04 -0.04 -0.032 -0.029 -0.033 -0.005 -0.028 -0.009 -0.034 -0.037 0.006 -0.04 -0.037 0.05 -0.04 -0.039 0.029 -0.015 -0.04 -0.033 -0.04 -0.016 -0.008 -0.029 -0.036 -0.036 -0.027 -0.012 -0.028 -0.037 0.048 -0.016 -0.03 -0.04 -0.034 -0.011 -0.04 -0.009 0.026 0.007 -0.04 -0.029 0.02 -0.033 -0.04 -0.04 -0.04 -0.04 0.08 -0.028 0.049 -0.029 -0.04 -0.035 -0.04 -0.04 -0.04 -0.04 0.003 -0.035 -0.034 -0.04 -0.025 0.029 0.993 -0.029 0.106 -0.04 0.437 -0.029 -0.04 -0.029 0.001 -0.04 -0.017 0.005 0.033 -0.028 -0.007 -0.035 -0.034 -0.01 -0.02 -0.03 -0.033 -0.022 -0.019 -0.04 0.224 -0.008 0.957 -0.004 -0.038 0.011 -0.03 -0.023 -0.04 -0.04 -0.027 -0.03 -0.035 -0.037 -0.04 0.069 -0.04 -0.04 -0.04 -0.036 0.087 -0.04 -0.04 -0.04 ZNF84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.005 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.002 0 0 0 0 0 0 0 0 0 0 0 0 0.002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 CAPZA3 -0.04 0.247 -0.093 0.762 -0.111 0.201 -0.11 -0.056 -0.111 -0.111 -0.095 0.112 -0.111 -0.111 -0.111 -0.111 -0.111 0.068 0.062 -0.092 -0.111 -0.03 -0.091 0.323 -0.024 -0.088 -0.111 -0.018 -0.111 -0.098 0.081 -0.036 -0.089 -0.06 0.144 -0.111 -0.029 -0.111 0.067 0.831 -0.095 -0.096 0.005 -0.017 -0.111 -0.111 -0.111 -0.111 -0.111 0.006 0.716 -0.111 -0.111 0.067 -0.092 -0.078 -0.111 -0.111 -0.111 -0.111 -0.111 -0.052 -0.097 -0.089 -0.099 -0.087 -0.091 -0.111 -0.111 -0.093 -0.076 -0.111 -0.111 0.03 0.59 -0.013 -0.072 -0.111 0.146 -0.111 -0.015 0.121 -0.111 -0.032 -0.111 -0.111 -0.028 -0.111 -0.111 -0.111 -0.021 -0.084 -0.111 -0.111 0.397 -0.111 1.927 0.298 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0.044 -0.007 -0.007 0.012 -0.007 -0.007 -0.007 -0.002 -0.002 -0.005 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 0 0.034 -0.007 -0.007 0.058 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 0.368 -0.006 0.001 -0.007 -0.007 -0.007 -0.002 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.006 -0.007 -0.007 -0.007 -0.007 -0.007 0.003 -0.007 -0.007 -0.007 -0.007 -0.007 0.075 -0.007 -0.007 -0.005 0.014 0.018 -0.003 -0.007 -0.007 0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 0.17 -0.007 -0.007 0.133 -0.007 -0.007 -0.001 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 0.001 -0.007 -0.007 -0.007 0.019 -0.007 -0.007 -0.007 -0.007 -0.007 -0.004 -0.007 -0.002 -0.007 -0.007 -0.007 -0.007 -0.007 0.007 -0.007 -0.007 -0.007 -0.007 -0.003 -0.007 -0.007 -0.007 0.038 -0.007 -0.007 -0.007 -0.007 -0.007 0.005 0.003 -0.007 -0.007 -0.007 -0.006 -0.007 -0.007 -0.007 -0.007 -0.007 0.003 -0.007 0.018 -0.007 -0.007 0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 -0.007 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-0.291 -0.142 -0.297 -0.278 -0.256 -0.297 -0.299 -0.296 -0.293 -0.015 -0.295 -0.295 -0.278 -0.287 -0.258 -0.278 -0.3 -0.196 -0.3 -0.292 -0.149 -0.296 -0.296 1.438 -0.288 -0.293 -0.283 -0.282 -0.286 -0.286 -0.239 -0.297 -0.299 -0.298 -0.293 -0.3 22.207 -0.256 -0.292 -0.299 -0.218 -0.265 -0.25 -0.284 -0.258 -0.263 -0.122 -0.296 1.287 -0.293 -0.278 -0.269 -0.3 -0.278 -0.3 -0.127 -0.284 -0.166 -0.038 -0.284 -0.3 -0.3 -0.3 -0.243 -0.272 -0.244 -0.266 -0.274 0.027 -0.285 -0.218 0.392 -0.27 -0.222 -0.295 5.938 -0.286 -0.3 -0.291 -0.221 -0.277 -0.285 -0.28 -0.278 -0.211 -0.285 -0.252 -0.288 -0.295 -0.275 -0.3 -0.296 -0.243 -0.3 -0.298 -0.256 -0.263 -0.3 -0.208 -0.237 -0.248 -0.277 -0.28 -0.234 -0.3 -0.289 -0.298 -0.297 -0.249 -0.285 -0.292 -0.297 -0.295 -0.294 -0.297 -0.295 -0.268 -0.274 -0.274 AICDA -0.088 -0.169 -0.155 -0.152 -0.085 1.599 -0.161 -0.143 -0.16 -0.1 -0.151 0.151 -0.152 -0.162 -0.163 -0.137 -0.15 0.549 0.023 -0.15 -0.156 -0.169 -0.042 -0.069 -0.142 -0.149 -0.152 -0.165 0.105 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