Mercurial > repos > iracooke > galaxy_protk

<?xml version="1.0"?>
<tool_dependency>
    <package name="galaxy_protk" version="1.1.9">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
                <action type="shell_command">sh install_protk.sh 1.1.9</action>
                <action type="move_file">
                    <source>install_protk.sh</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$HOME/.rvm/bin/</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            This package installs the protk rubygem which provides facilities for running various proteomics tools via galaxy.

            Installation of this package requires that you have the following packages (or equivalents) installed gcc g++ patch zlib zlib-devel libyaml-devel libffi-devel  openssl-devel  make  bzip2  autoconf  automake  libtool  bison  iconv-devel libxml2 libxml2-devel zlib zlib-devel bzip2 make

            For more about protk see https://bitbucket.org/iracooke/protk

            In order to install ruby and the protk rubygem this package will install rvm (http://rvm.io) to the home directory of your galaxy user at ~/.rvm (if rvm is not already installed).
            The protk rubygem is installed in its own gemset and will not interfere with other ruby installations or ruby gems
        </readme>
    </package>
</tool_dependency>
author	iracooke
date	Mon, 04 Mar 2013 00:52:52 -0500
parents
children	dac478a72c1d