Mercurial > repos > iracooke > make_protein_decoys

diff make_decoy.xml @ 1:354e820eb485 draft

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Docker support and update for protk 1.4
author iracooke
date Thu, 26 Mar 2015 21:27:53 -0400
parents a90539d8e409
children bd4844c664f2
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line diff
--- a/make_decoy.xml	Fri Jun 13 18:10:03 2014 -0400
+++ b/make_decoy.xml	Thu Mar 26 21:27:53 2015 -0400
@@ -1,6 +1,7 @@
 <tool id="make_decoy" name="Generate protein decoy sequences" version="1.0.0">
 	<requirements>
-	    <requirement type="package" version="1.3">protk</requirement>
+		<container type="docker">iracooke/protk-1.4.1</container>
+	    <requirement type="package" version="1.4">protk</requirement>
    </requirements>
 
 	<description>
@@ -25,6 +26,18 @@
 		<data format="fasta" name="output" />
 	</outputs>
 
+	<tests>
+	  <test>
+	      <param name="fasta_file" value="testdb.fasta" format="fasta"/>
+	      <output name="output" format="fasta">
+	      	<assert_contents>
+	      	    <has_text text="decoy_rp3" />
+	      	</assert_contents>
+	      </output>
+	  </test>
+	</tests>
+
+
 
   <help>