Mercurial > repos > iracooke > mascot
comparison mascot.xml @ 4:d9564913a944
Uploaded
author | iracooke |
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date | Tue, 05 Mar 2013 00:18:41 -0500 |
parents | 579b1f9146b4 |
children | 327b2d99d4c5 |
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3:1747d568a7c8 | 4:d9564913a944 |
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1 <tool id="proteomics_search_mascot_1" name="Mascot MSMS Search" version="1.0.0"> | 1 <tool id="proteomics_search_mascot_1" name="Mascot MSMS Search" version="1.0.1"> |
2 | 2 |
3 | 3 |
4 <requirements> | 4 <requirements> |
5 <requirement type="package" version="1.1.9">galaxy_protk</requirement> | 5 <requirement type="package" version="1.2.0">galaxy_protk</requirement> |
6 </requirements> | 6 </requirements> |
7 | 7 |
8 <description>Run a Mascot Search on a File</description> | 8 <description>Mascot MS/MS Search</description> |
9 | 9 |
10 | 10 |
11 <command>rvm 1.9.3@protk-1.1.9 do mascot_search.rb -d $database -f $fragment_ion_tol -S $server $input_file -o $output -r | 11 <command>rvm 1.9.3@protk-1.2.0 do mascot_search.rb -d $database -f $fragment_ion_tol -S $server $input_file -o $output -r |
12 ## Variable Mods | 12 ## Variable Mods |
13 | 13 |
14 --var-mods=' | 14 --var-mods=' |
15 $variable_mods | 15 $variable_mods |
16 ' | 16 ' |