comparison omssa.xml @ 3:155b6449fdf3

Uploaded

2:5ba3d95534a5

<tool id="proteomics_search_omssa_1" name="OMSSA MSMS Search" version="1.0.0">

   <requirements>
	    <requirement type="package" version="1.1.9">galaxy_protk</requirement>
    	<requirement type="package" version="2.1.8">omssa</requirement>
    	<requirement type="package" version="2.2.27">blast</requirement>
   </requirements>


	<description>Run an OMSSA MS/MS Search</description>
		
	<command>#if $database.source_select=="built_in":
		rvm 1.9.3@protk-1.1.9 do omssa_search.rb -d $database.dbkey 
		#else #rvm 1.9.3@protk-1.1.9 do omssa_search.rb -d $database.fasta_file
		#end if
		
		--var-mods='
		$variable_mods
		'

3:155b6449fdf3

<tool id="proteomics_search_omssa_1" name="OMSSA MSMS Search" version="1.0.1">

   <requirements>
	    <requirement type="package" version="1.2.0">galaxy_protk</requirement>
    	<requirement type="package" version="2.1.8">omssa</requirement>
    	<requirement type="package" version="2.2.27">blast</requirement>
   </requirements>


	<description>Run an OMSSA MS/MS Search</description>
		
	<command>#if $database.source_select=="built_in":
		rvm 1.9.3@protk-1.2.0 do omssa_search.rb -d $database.dbkey 
		#else #rvm 1.9.3@protk-1.2.0 do omssa_search.rb -d $database.fasta_file
		#end if
		
		--var-mods='
		$variable_mods
		'