comparison omssa.xml @ 1:21cede3cfb9b

Uploaded

0:5e1594a15956

<tool id="proteomics_search_omssa_1" name="OMSSA MSMS Search" version="1.0.0">
	<requirements>
		<requirement type="package">protkgem</requirement>
	</requirements>
	
	<description>Run an OMSSA MS/MS Search</description>
		
	<command>#if $database.source_select=="built_in":
		omssa_search.rb -d $database.dbkey 
		#else #omssa_search.rb -d $database.fasta_file
		#end if
		
		--var-mods='
		$variable_mods
		'

1:21cede3cfb9b

<tool id="proteomics_search_omssa_1" name="OMSSA MSMS Search" version="1.0.0">

   <requirements>
	    <requirement type="package" version="1.1.9">galaxy_protk</requirement>
    	<requirement type="package" version="2.1.8">omssa</requirement>
    	<requirement type="package" version="2.2.27">blast</requirement>
   </requirements>


	<description>Run an OMSSA MS/MS Search</description>
		
	<command>#if $database.source_select=="built_in":
		rvm 1.9.3@protk-1.1.9 do omssa_search.rb -d $database.dbkey 
		#else #rvm 1.9.3@protk-1.1.9 do omssa_search.rb -d $database.fasta_file
		#end if
		
		--var-mods='
		$variable_mods
		'