# HG changeset patch
# User iracooke
# Date 1403710965 14400
# Node ID 45ee9e65471f8d307144df48c1b96e425f2354e7

Uploaded

diff -r 000000000000 -r 45ee9e65471f tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jun 25 11:42:45 2014 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="peptide_shaker" version="0.31.4">
+    <install version="1.0">
+        <actions>            
+            <action type="download_by_url">http://genesis.ugent.be/maven2/eu/isas/peptideshaker/PeptideShaker/0.31.4/PeptideShaker-0.31.4.zip</action>
+            <action type="shell_command">chmod -R o+w resources</action>
+            <action type="move_directory_files">
+                <source_directory>.</source_directory>
+                <destination_directory>$INSTALL_DIR/</destination_directory>
+            </action>
+            <action type="set_environment">
+                <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                <environment_variable name="PEPTIDESHAKER_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                <environment_variable name="PEPTIDESHAKER_JAR_PATH" action="set_to">$INSTALL_DIR/PeptideShaker-0.31.4.jar</environment_variable>
+            </action>
+        </actions>
+    </install>
+    <readme>
+        Install Galaxy package application for PeptideShaker 0.31.4
+        http://peptide-shaker.googlecode.com 
+    </readme>
+  </package>
+</tool_dependency>