Mercurial > repos > iracooke > package_peptideshaker_0_31

changeset 0:45ee9e65471f draft default tip

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author iracooke
date Wed, 25 Jun 2014 11:42:45 -0400
parents
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files tool_dependencies.xml
diffstat 1 files changed, 24 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jun 25 11:42:45 2014 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="peptide_shaker" version="0.31.4">
+    <install version="1.0">
+        <actions>            
+            <action type="download_by_url">http://genesis.ugent.be/maven2/eu/isas/peptideshaker/PeptideShaker/0.31.4/PeptideShaker-0.31.4.zip</action>
+            <action type="shell_command">chmod -R o+w resources</action>
+            <action type="move_directory_files">
+                <source_directory>.</source_directory>
+                <destination_directory>$INSTALL_DIR/</destination_directory>
+            </action>
+            <action type="set_environment">
+                <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                <environment_variable name="PEPTIDESHAKER_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                <environment_variable name="PEPTIDESHAKER_JAR_PATH" action="set_to">$INSTALL_DIR/PeptideShaker-0.31.4.jar</environment_variable>
+            </action>
+        </actions>
+    </install>
+    <readme>
+        Install Galaxy package application for PeptideShaker 0.31.4
+        http://peptide-shaker.googlecode.com 
+    </readme>
+  </package>
+</tool_dependency>