annotate tool_dependencies.xml @ 0:9a4d33da1cce draft default tip

planemo upload commit 04b529c9366e6b77f45bfaa44c1a7fac5772f5b9

<?xml version="1.0"?>
<tool_dependency>
    <package name="peptide_shaker" version="0.40">
    <install version="1.0">
        <actions>
            <action type="download_by_url">http://genesis.ugent.be/maven2/eu/isas/peptideshaker/PeptideShaker/0.40.0/PeptideShaker-0.40.0.zip</action>
            <action type="move_directory_files">
                <source_directory>.</source_directory>
                <destination_directory>$INSTALL_DIR/</destination_directory>
            </action>
            <action type="set_environment">
                <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                <environment_variable name="PEPTIDESHAKER_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                <environment_variable name="PEPTIDESHAKER_JAR_PATH" action="set_to">$INSTALL_DIR/PeptideShaker-0.40.0.jar</environment_variable>
            </action>
        </actions>
    </install>
    <readme>
        Install Galaxy package application for PeptideShaker 0.40
        http://peptide-shaker.googlecode.com 
    </readme>
  </package>
</tool_dependency>