# HG changeset patch
# User iracooke
# Date 1402783759 14400
# Node ID 9a0d14f0f24932e46bef203438f43ec3b3c071bc
Uploaded
diff -r 000000000000 -r 9a0d14f0f249 README
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+Create protein database from gff3 including encoding genome coordinates into the fasta header
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+Requirements:
+This package uses protk which must be installed separately.
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+For instructions please see: https://github.com/iracooke/protk/#galaxy-integration
diff -r 000000000000 -r 9a0d14f0f249 README.md
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+# Create protein database from gff3 including encoding genome coordinates into the fasta header
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+
diff -r 000000000000 -r 9a0d14f0f249 proteindb_from_gff3.xml
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+++ b/proteindb_from_gff3.xml Sat Jun 14 18:09:19 2014 -0400
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+ protk
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+ Extract proteins from gff3 and encode genomic coordinates in the fasta header
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+ augustus_to_proteindb.rb $gff_file -o $output $coords
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+**What it does**
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+Extract proteins from gff3 and encode genomic coordinates in the fasta header.
+Currently this only works with gff3 generated using the Augustus gene finder
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+----
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+**References**
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diff -r 000000000000 -r 9a0d14f0f249 repository_dependencies.xml
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+++ b/repository_dependencies.xml Sat Jun 14 18:09:19 2014 -0400
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