annotate datatypes_conf.xml @ 18:d1ea609e57d4 draft

Make splib a composite datatype

<?xml version="1.0"?>
<datatypes>
  <datatype_files>
    <datatype_file name="proteomics.py"/>
  </datatype_files>
  <registration display_path="display_applications">
    <datatype extension="cps" type="galaxy.datatypes.binary:Binary" subclass="True" display_in_upload="true" />
    <datatype extension="pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" display_in_upload="true">
      <display file="proteomics/PepXml.xml" />
    </datatype>
    <datatype extension="raw_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true">
      <display file="proteomics/PepXml.xml" />
    </datatype>
    <datatype extension="peptideprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true">
      <display file="proteomics/PepXml.xml" />
    </datatype>
    <datatype extension="interprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true">
      <display file="proteomics/PepXml.xml" />
    </datatype>
    <datatype extension="protxml" type="galaxy.datatypes.proteomics:ProtXML" mimetype="application/xml" display_in_upload="true" >
      <display file="proteomics/ProtXml.xml"/>
    </datatype>
    <datatype extension="trafoxml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml" 
        subclass="True" display_in_upload="True" description="Transformationen of retention times"/>
    <datatype extension="qcml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml" 
        subclass="True" display_in_upload="True" description="Quality control data in XML format (https://code.google.com/p/qcml/)."/>
    <datatype extension="pepxml.tsv" type="galaxy.datatypes.proteomics:PepXmlReport" display_in_upload="true" />
    <datatype extension="protxml.tsv" type="galaxy.datatypes.proteomics:ProtXmlReport" display_in_upload="true" />
    <datatype extension="mascotdat" type="galaxy.datatypes.proteomics:MascotDat" display_in_upload="false" />
    <datatype extension="mzml" type="galaxy.datatypes.proteomics:MzML" mimetype="application/xml" display_in_upload="true">
      <display file="proteomics/mzML.xml"/>
      <display file="proteomics/protvis_mzml.xml"/>
    </datatype>
    <datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf" display_in_upload="true" />
    <datatype extension="idpdb" type="galaxy.datatypes.proteomics:IdpDB" display_in_upload="true" />
    <datatype extension="wiff" type="galaxy.datatypes.proteomics:Wiff" display_in_upload="true" />
    <datatype extension="mzxml" type="galaxy.datatypes.proteomics:MzXML" mimetype="application/xml" display_in_upload="true" />
    <datatype extension="mzq" type="galaxy.datatypes.proteomics:MzQuantML" mimetype="application/xml" display_in_upload="true" />
    <datatype extension="mzid" type="galaxy.datatypes.proteomics:MzIdentML" mimetype="application/xml" display_in_upload="true" />
    <datatype extension="traml" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml" display_in_upload="true" />
    <datatype extension="featurexml" type="galaxy.datatypes.proteomics:FeatureXML" mimetype="application/xml" display_in_upload="true" />
    <datatype extension="consensusxml" type="galaxy.datatypes.proteomics:ConsensusXML" mimetype="application/xml" display_in_upload="true" />
    <datatype extension="idxml" type="galaxy.datatypes.proteomics:IdXML" mimetype="application/xml" display_in_upload="true" />
    <datatype extension="tandem" type="galaxy.datatypes.proteomics:TandemXML" mimetype="application/xml" display_in_upload="true" />
    <datatype extension="raw" type="galaxy.datatypes.proteomics:RAW" mimetype="application/octet-stream" display_in_upload="true" />
    <datatype extension="msp" type="galaxy.datatypes.proteomics:Msp" display_in_upload="true" />
    <datatype extension="ms2" type="galaxy.datatypes.proteomics:Ms2" display_in_upload="true" />
    <datatype extension="hlf" type="galaxy.datatypes.proteomics:XHunterAslFormat" mimetype="application/octet-stream" display_in_upload="true" />
    <datatype extension="splib" type="galaxy.datatypes.proteomics:SPLib" display_in_upload="true" />
  </registration>
  <sniffers>
    <sniffer type="galaxy.datatypes.proteomics:MzML"/>
    <sniffer type="galaxy.datatypes.proteomics:TandemXML"/>
    <sniffer type="galaxy.datatypes.proteomics:PepXml"/>
    <sniffer type="galaxy.datatypes.proteomics:Mgf"/>
    <sniffer type="galaxy.datatypes.proteomics:ProtXML"/>
    <sniffer type="galaxy.datatypes.proteomics:MzXML"/>
    <sniffer type="galaxy.datatypes.proteomics:TraML"/>
    <sniffer type="galaxy.datatypes.proteomics:MzIdentML"/>
    <sniffer type="galaxy.datatypes.proteomics:MzQuantML"/>
    <sniffer type="galaxy.datatypes.proteomics:Msp"/>
    <sniffer type="galaxy.datatypes.proteomics:SPLib"/>
  </sniffers>
</datatypes>