comparison proteomics.py @ 19:e5551a35e508 draft

planemo upload for repository https://github.com/iracooke/proteomics-datatypes commit a71820c91d9d7629415a27526bbf700800d12f3f

18:d1ea609e57d4

        >>> Msp().sniff(fname)
        False
        """
        with open(filename, 'r') as contents:
            return Msp.next_line_starts_with(contents, "Name:") and Msp.next_line_starts_with(contents, "MW:")


class SPLib( Msp ):
    """SpectraST Spectral Library. Closely related to msp format"""
    file_ext = "splib"

    """ Annotated Spectra in the HLF format http://www.thegpm.org/HUNTER/format_2006_09_15.html """
    file_ext = "hlf"

if hasattr(Binary, 'register_unsniffable_binary_ext'):
    Binary.register_unsniffable_binary_ext('hlf')

19:e5551a35e508

        >>> Msp().sniff(fname)
        False
        """
        with open(filename, 'r') as contents:
            return Msp.next_line_starts_with(contents, "Name:") and Msp.next_line_starts_with(contents, "MW:")

class SPLibNoIndex( Text ):
    """SPlib without index file """
    file_ext = "splib"

    def set_peek( self, dataset, is_multi_byte=False ):
        """Set the peek and blurb text"""
        if not dataset.dataset.purged:
            dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
            dataset.blurb = 'Spectral Library without index files'
        else:
            dataset.peek = 'file does not exist'
            dataset.blurb = 'file purged from disk'


class SPLib( Msp ):
    """SpectraST Spectral Library. Closely related to msp format"""
    file_ext = "splib"

    """ Annotated Spectra in the HLF format http://www.thegpm.org/HUNTER/format_2006_09_15.html """
    file_ext = "hlf"

if hasattr(Binary, 'register_unsniffable_binary_ext'):
    Binary.register_unsniffable_binary_ext('hlf')


class Sf3(Binary):
    """Class describing a Scaffold SF3 files"""
    file_ext = "sf3"

if hasattr(Binary, 'register_unsniffable_binary_ext'):
    Binary.register_unsniffable_binary_ext('sf3')