Mercurial > repos > iracooke > proteomics_datatypes

comparison README.rst @ 16:e6a02a387448 draft

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planemo upload commit 4f23896d1a519a87f189c6238a95b8f5b5933e9a-dirty
author iracooke
date Sun, 17 May 2015 23:33:49 -0400
parents de34893b3834
children 29c43b953c1c
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15:de34893b3834 16:e6a02a387448
33 FeatureXML featurexml False OpenMS_ 33 FeatureXML featurexml False OpenMS_
34 ConsensusXML consensusxml False OpenMS_ 34 ConsensusXML consensusxml False OpenMS_
35 IdXML idxml False OpenMS_ 35 IdXML idxml False OpenMS_
36 TandemXML_ tandem False XTandem output 36 TandemXML_ tandem False XTandem output
37 RAW raw False Raw Mass Spec Data 37 RAW raw False Raw Mass Spec Data
38 Msp msp False Spectral Library 38 Msp_ msp True Spectral Library
39 SPLib splib True Spectral Library
39 Ms2 ms2 False MS/MS Spectra 40 Ms2 ms2 False MS/MS Spectra
40 XHunterAslFormat hlf False Spectral Library 41 XHunterAslFormat hlf False Spectral Library
41 ================ ===================== ======= ==================================== 42 ================ ===================== ======= ====================================
42 43
43 44
51 .. _MzML: http://www.psidev.info/mzml_1_0_0%20 52 .. _MzML: http://www.psidev.info/mzml_1_0_0%20
52 .. _MzQuantML: http://www.psidev.info/mzquantml 53 .. _MzQuantML: http://www.psidev.info/mzquantml
53 .. _MzIdentML: http://www.psidev.info/mzidentml 54 .. _MzIdentML: http://www.psidev.info/mzidentml
54 .. _TraML: http://www.psidev.info/traml 55 .. _TraML: http://www.psidev.info/traml
55 .. _TandemXML: http://www.thegpm.org/docs/X_series_output_form.pdf 56 .. _TandemXML: http://www.thegpm.org/docs/X_series_output_form.pdf
57 .. _Msp: http://chemdata.nist.gov/mass-spc/ftp/mass-spc/PepLib.pdf
58 .. _SPLib: http://tools.proteomecenter.org/wiki/index.php?title=Software:SpectraST#Developer.27s_Guide
56 59
57 Visualization 60 Visualization
58 ------------- 61 -------------
59 62
60 This package also installs display applications for mzML, PepXML and ProtXML formats. These are designed to work with the protviz_ web application. Configuring this application requires a fair number of extra steps though. See the protviz_ documentation for more info. 63 This package also installs display applications for mzML, PepXML and ProtXML formats. These are designed to work with the protviz_ web application. Configuring this application requires a fair number of extra steps though. See the protviz_ documentation for more info.