comparison proteomics.py @ 16:e6a02a387448 draft

planemo upload commit 4f23896d1a519a87f189c6238a95b8f5b5933e9a-dirty

15:de34893b3834

        >>> Msp().sniff(fname)
        False
        """
        with open(filename, 'r') as contents:
            return Msp.next_line_starts_with(contents, "Name:") and Msp.next_line_starts_with(contents, "MW:")

class Ms2(Text):
    file_ext = "ms2"
    
    def sniff(self, filename):

16:e6a02a387448

        >>> Msp().sniff(fname)
        False
        """
        with open(filename, 'r') as contents:
            return Msp.next_line_starts_with(contents, "Name:") and Msp.next_line_starts_with(contents, "MW:")


class SPLib( Msp ):
    """SpectraST Spectral Library. Closely related to msp format"""
    file_ext = "splib"

    def set_peek( self, dataset, is_multi_byte=False ):
        """Set the peek and blurb text"""
        if not dataset.dataset.purged:
            dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
            dataset.blurb = 'splib Spectral Library Format'
        else:
            dataset.peek = 'file does not exist'
            dataset.blurb = 'file purged from disk'


class Ms2(Text):
    file_ext = "ms2"
    
    def sniff(self, filename):