comparison pepxml_to_table.xml @ 0:a929e27eb203 draft

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author iracooke
date Thu, 21 Jun 2012 22:30:48 -0400
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1 <tool id="pepxml_to_table_1" name="PepXML to Table" version="1.0.0">
2 <requirements><requirement type="package">protk</requirement></requirements>
3 <description>Converts a pepXML file to a tab delimited text file</description>
4
5
6 <!-- Note .. the input file is assumed to be the first argument -->
7 <command>pepxml_to_table.rb $input_file -o $output</command>
8
9
10 <inputs>
11
12 <param name="input_file" type="data" format="pepxml" multiple="false" label="Input File" help="A pepXML file"/>
13
14 </inputs>
15 <outputs>
16 <data format="csv" name="output" metadata_source="input_file" label="${input_file.display_name}.csv" />
17 </outputs>
18
19 <help>
20 Convert a pepXML file to Tab delimited text
21 </help>
22
23 </tool>