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Better defaults for omssa
author Ira Cooke <iracooke@gmail.com>
date Mon, 23 Jul 2012 14:48:31 +1000
parents a929e27eb203
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<tool id="pepxml_to_table_1" name="PepXML to Table" version="1.0.0">
	<requirements><requirement type="package">protk</requirement></requirements>
  <description>Converts a pepXML file to a tab delimited text file</description>


<!-- Note .. the input file is assumed to be the first argument -->
<command>pepxml_to_table.rb $input_file -o $output</command>


<inputs>

	<param name="input_file" type="data" format="pepxml"  multiple="false" label="Input File" help="A pepXML file"/>

</inputs>
<outputs>
	<data format="csv" name="output" metadata_source="input_file" label="${input_file.display_name}.csv" />
</outputs>

<help>
	Convert a pepXML file to Tab delimited text
</help>

</tool>