Mercurial > repos > iracooke > protk
changeset 3:255b5b6ec617 draft default tip
Better defaults for omssa
| author | Ira Cooke <iracooke@gmail.com> |
|---|---|
| date | Mon, 23 Jul 2012 14:48:31 +1000 |
| parents | 418f42b34049 |
| children | |
| files | omssa.xml |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/omssa.xml Mon Jul 23 00:20:58 2012 -0400 +++ b/omssa.xml Mon Jul 23 14:48:31 2012 +1000 @@ -103,7 +103,7 @@ </param> <param name="fragment_ion_tol" help="Fragment Ion Tolerance in Daltons" type="float" value="0.65" min="0" max="10000" label="Fragment ion tolerance"/> - <param name="max_hit_expect" help="Expect values less than this are considered to be hits. Use a large value, eg 10000 when results will be processed downstream with Peptide Prophet" type="float" value="1.0" min="0" max="10000000" label="Maximum Expect value allowed in the hit list"/><!-- -he--> + <param name="max_hit_expect" help="Expect values less than this are considered to be hits. Use a large value, eg 10000 when results will be processed downstream with Peptide Prophet" type="float" value="10000.0" min="0" max="10000000" label="Maximum Expect value allowed in the hit list"/><!-- -he--> <param name="intensity_cut_off" help="Peak intensity cut-off as a fraction of maximum peak intensity" type="float" value="0.0005" min="0" max="1" label="Peak intensity cut-off"/><!-- -ci-->