Mercurial > repos > iracooke > protk_blast

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author Ira Cooke <iracooke@gmail.com>
date Sun, 09 Jun 2013 08:16:19 -0500
parents 0d86d29aaed6
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<?xml version="1.0"?>
<tool_dependency>
    <package name="galaxy_protk" version="1.2.2">
         <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="c25df71f7b68" prior_installation_required="True"/>
    </package>
    <package name="blast" version="2.2.27">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
                <action type="shell_command">sh install_blast.sh $INSTALL_DIR 1.2.2</action>
                <action type="move_file">
                    <source>install_blast.sh</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PROTK_BLAST_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Installs BLAST via the protk installer
        </readme>
    </package>

</tool_dependency>