# HG changeset patch
# User iracooke
# Date 1362459889 18000
# Node ID f77532db59b6ccf3a8318e9515604ba3d61ec769
# Parent e924c0d646d02f1c7836d6559b5784823493ca5e
Uploaded
diff -r e924c0d646d0 -r f77532db59b6 README
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/README Tue Mar 05 00:04:49 2013 -0500
@@ -0,0 +1,49 @@
+This package installs the OMSSA MS/MS search engine
+
+Full details about OMSSA including a paper describing its algorithm
+can be found at http://pubchem.ncbi.nlm.nih.gov/omssa/
+
+Requirements:
+This package depends on the galaxy_protk package
+Please see instructions for that package before installing
+
+
+--- DISCLAIMER ----
+
+National Library of Medicine disclaimer:
+http://www.ncbi.nlm.nih.gov/About/disclaimer.html
+
+NCBI source code disclaimer:
+ **************************************************************************
+ * *
+ * National Center for Biotechnology Information *
+ * Bldg. 38A, NIH, 8600 Rockville Pike, Bethesda, MD 20894 *
+ * *
+ * COPYRIGHT NOTICE *
+ * *
+ * This software/database is "United States Government Work" under the *
+ * terms of the United States Copyright Act. It was written as part of *
+ * the author's official duties as a Government employee and thus cannot *
+ * be copyrighted. This software/database is freely available to the *
+ * public for use without a copyright notice. Restrictions cannot be *
+ * placed on its present or future use. *
+ * *
+ * Although all reasonable efforts have been taken to ensure the accuracy *
+ * and reliability of the software and data, the National Library of *
+ * Medicine (NLM) and the U.S. Government does not and cannot warrant the *
+ * performance or results that may be obtained by using this software or *
+ * data. The NLM and the U.S. Government disclaims all warranties as to *
+ * performance, merchantability or fitness for any particular purpose. *
+ * *
+ * In any work or product derived from this material, proper attribution *
+ * of the author as the source of the software or data would be *
+ * appreciated. *
+ * *
+ **************************************************************************
+
+OMSSA Citation:
+Geer LY, Markey SP, Kowalak JA, Wagner L, Xu M, Maynard DM, Yang X, Shi W, Bryant SH. "Open mass spectrometry search algorithm." J Proteome Res. 2004 Sep-Oct;3(5):958-64.
+
+http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15473683
+
+
diff -r e924c0d646d0 -r f77532db59b6 repository_dependencies.xml
--- a/repository_dependencies.xml Mon Mar 04 04:15:33 2013 -0500
+++ b/repository_dependencies.xml Tue Mar 05 00:04:49 2013 -0500
@@ -5,5 +5,5 @@
-->
-
+
\ No newline at end of file
diff -r e924c0d646d0 -r f77532db59b6 tool_dependencies.xml
--- a/tool_dependencies.xml Mon Mar 04 04:15:33 2013 -0500
+++ b/tool_dependencies.xml Tue Mar 05 00:04:49 2013 -0500
@@ -4,7 +4,7 @@
https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz
- sh install_omssa.sh $INSTALL_DIR 1.1.9
+ sh install_omssa.sh $INSTALL_DIR 1.2.0install_omssa.sh$INSTALL_DIR