annotate test-data/augustus_sample.gff @ 2:68d8c9e521d7 draft

planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
author iracooke
date Tue, 20 Oct 2015 20:34:50 -0400
parents 28067ed4ea0e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
1 ##gff-version 3
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
2 # This output was generated with AUGUSTUS (version 2.5.5).
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
3 # AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mario.stanke@uni-greifswald.de)
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
4 # and Oliver Keller (keller@cs.uni-goettingen.de).
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
5 # Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
6 # Using native and syntenically mapped cDNA alignments to improve de novo gene finding
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
7 # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
8 # No extrinsic information on sequences given.
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
9 # Initialising the parameters ...
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
10 # venturia_inaequalis version. Use default transition matrix.
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
11 # Looks like /home/virtualdan/winshare/vp/final_vp_assembly/Pirina.100.fasta is in fasta format.
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
12 # We have hints for 0 sequences and for 0 of the sequences in the input set.
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
13 #
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
14 # ----- prediction on sequence number 1 (length = 532736, name = scaffold14) -----
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
15 #
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
16 # Predicted genes for sequence number 1 on both strands
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
17 # start gene g1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
18 scaffold14 AUGUSTUS gene 2517 3803 . - . ID=g1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
19 scaffold14 AUGUSTUS transcript 2517 3803 0.92 - . ID=g1.t1;Parent=g1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
20 scaffold14 AUGUSTUS stop_codon 2517 2519 . - 0 Parent=g1.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
21 scaffold14 AUGUSTUS CDS 2517 3803 0.92 - 0 ID=g1.t1.cds;Parent=g1.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
22 scaffold14 AUGUSTUS start_codon 3801 3803 . - 0 Parent=g1.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
23 # coding sequence = [atggcagggctagcagcaggcattgttggtgtcgtgtcagctggtaccaaagtcgccatcgtcctttcgcagtatggca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
24 # atgaagtgggagcagctggccaagaagcgcgaatgatcgcgtcggaaatccgaggatcatgcacagttctcacgaccctccactcgacattgaaacat
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
25 # gtccagacatcgccgtactacgcgaattgcgctgaactgatcagcgatatgaccgatgcgagtctggagatgtatacggaaatcatggaggtcgtcga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
26 # gggattgtcggcaatgacgagcgacagcaagatgaatttgaggaagcggctgctgtggacctttcaaaagccgaagatcgttatgttgagaacggcac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
27 # tggaggcctatagatcgaatttggctcttatgcttggaacgttggatatggctgagaaggcctcgcgaagctacgttgctttgactgaggagattgtg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
28 # caggaagatgaaatggactgcgcaaagcttcaagacctacaactggaacaacaaatgtctctgcttaaggttcaagagttggacccggaaagtatcga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
29 # gcttccgcctagcccaacgggcgcagggcggggattttgggggtcgtcaaataaagaatctgcatttccagtcgaggagggttatgtcagtgccctga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
30 # gagaagagattgcgactctcaagaggagccgaactgtctacctgacagaccccgaaaaggtgcgcgatcgagtagctcgacagagcaatcgtttgtcc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
31 # caactcctcgtccaggatcagaggagaatttcgcgaagatggtctcaatccctgccagagagacgtatgagcatgtacagcgacttggcagcagagag
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
32 # gtcacggtcgcctacgagtacgcctggcagctcatcagcctccccgagcgaatccagcgatgatctatccagcgattatgcccaggtgaacgaaccca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
33 # tggttagagacttttatgcttggatgtctgcgcaaactggcgttcagcggagcattgtgcttcgacagctgcaagcgcggtttggtgatgggcgaggg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
34 # acaactgtccgcaagcccgtcaacggtgttggaatccatccaggagcaagcgaggacacactatgcgccgatgtctccaagcttgaattggagaagga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
35 # tgcagttgcagcagagacctacgagagacaggctgagccagctcctgtggttggagccagtaaggaaaagaagagctcgttcttgaagaggtcaatgg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
36 # ggttgaaaagacgaacgccgtcagcgtcgtga]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
37 # protein sequence = [MAGLAAGIVGVVSAGTKVAIVLSQYGNEVGAAGQEARMIASEIRGSCTVLTTLHSTLKHVQTSPYYANCAELISDMTD
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
38 # ASLEMYTEIMEVVEGLSAMTSDSKMNLRKRLLWTFQKPKIVMLRTALEAYRSNLALMLGTLDMAEKASRSYVALTEEIVQEDEMDCAKLQDLQLEQQM
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
39 # SLLKVQELDPESIELPPSPTGAGRGFWGSSNKESAFPVEEGYVSALREEIATLKRSRTVYLTDPEKVRDRVARQSNRLSQLLVQDQRRISRRWSQSLP
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
40 # ERRMSMYSDLAAERSRSPTSTPGSSSASPSESSDDLSSDYAQVNEPMVRDFYAWMSAQTGVQRSIVLRQLQARFGDGRGTTVRKPVNGVGIHPGASED
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
41 # TLCADVSKLELEKDAVAAETYERQAEPAPVVGASKEKKSSFLKRSMGLKRRTPSAS]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
42 # end gene g1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
43 ###
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
44 # start gene g2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
45 scaffold14 AUGUSTUS gene 6798 7541 . - . ID=g2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
46 scaffold14 AUGUSTUS transcript 6798 7541 0.56 - . ID=g2.t1;Parent=g2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
47 scaffold14 AUGUSTUS stop_codon 6798 6800 . - 0 Parent=g2.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
48 scaffold14 AUGUSTUS intron 6936 6986 1 - . Parent=g2.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
49 scaffold14 AUGUSTUS intron 7068 7117 1 - . Parent=g2.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
50 scaffold14 AUGUSTUS intron 7275 7401 0.63 - . Parent=g2.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
51 scaffold14 AUGUSTUS CDS 6798 6935 0.97 - 0 ID=g2.t1.cds;Parent=g2.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
52 scaffold14 AUGUSTUS CDS 6987 7067 1 - 0 ID=g2.t1.cds;Parent=g2.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
53 scaffold14 AUGUSTUS CDS 7118 7274 1 - 1 ID=g2.t1.cds;Parent=g2.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
54 scaffold14 AUGUSTUS CDS 7402 7541 0.59 - 0 ID=g2.t1.cds;Parent=g2.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
55 scaffold14 AUGUSTUS start_codon 7539 7541 . - 0 Parent=g2.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
56 # coding sequence = [atgcctaccagattatccaacacccgcaagcaccgcggtcacgtctctgccggtcacggtcgtgtcggcaagcagtatg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
57 # tcacacccctcagcaaccctctcctcgacgttgaacggatcttccaattttcgccattgcaccgcaagcatcccggtggtcgtggtctcgctggtggt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
58 # cagcaccaccacaggaccaacatggataaataccatccaggttacttcggaaaggtcggtatgcgatacttccacaagcaaggcaaccacttctggaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
59 # gccaaccatcaacttggacaagctttggtccctcgttcctctcgagcagcgcgaaaagtacatctccaacaagaagtccgacacagctccagttctcg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
60 # acctcctctccttcggttactcaaaggtcctcggaaagggtcgtctcccagaaatcccactcgtcgtccgcgcccgatacttctccgcagaagccgaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
61 # aagaagatcaaggaagctggcggagtcgtccagttggtcggttag]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
62 # protein sequence = [MPTRLSNTRKHRGHVSAGHGRVGKQYVTPLSNPLLDVERIFQFSPLHRKHPGGRGLAGGQHHHRTNMDKYHPGYFGKV
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
63 # GMRYFHKQGNHFWKPTINLDKLWSLVPLEQREKYISNKKSDTAPVLDLLSFGYSKVLGKGRLPEIPLVVRARYFSAEAEKKIKEAGGVVQLVG]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
64 scaffold14 AUGUSTUS transcript 6798 7541 0.32 - . ID=g2.t2;Parent=g2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
65 scaffold14 AUGUSTUS stop_codon 6798 6800 . - 0 Parent=g2.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
66 scaffold14 AUGUSTUS intron 6936 6986 1 - . Parent=g2.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
67 scaffold14 AUGUSTUS intron 7068 7117 1 - . Parent=g2.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
68 scaffold14 AUGUSTUS intron 7275 7467 0.37 - . Parent=g2.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
69 scaffold14 AUGUSTUS CDS 6798 6935 0.97 - 0 ID=g2.t2.cds;Parent=g2.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
70 scaffold14 AUGUSTUS CDS 6987 7067 1 - 0 ID=g2.t2.cds;Parent=g2.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
71 scaffold14 AUGUSTUS CDS 7118 7274 1 - 1 ID=g2.t2.cds;Parent=g2.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
72 scaffold14 AUGUSTUS CDS 7468 7541 0.33 - 0 ID=g2.t2.cds;Parent=g2.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
73 scaffold14 AUGUSTUS start_codon 7539 7541 . - 0 Parent=g2.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
74 # coding sequence = [atgcctaccagattatccaacacccgcaagcaccgcggtcacgtctctgccggtcacggtcgtgtcggcaagcaccgca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
75 # agcatcccggtggtcgtggtctcgctggtggtcagcaccaccacaggaccaacatggataaataccatccaggttacttcggaaaggtcggtatgcga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
76 # tacttccacaagcaaggcaaccacttctggaagccaaccatcaacttggacaagctttggtccctcgttcctctcgagcagcgcgaaaagtacatctc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
77 # caacaagaagtccgacacagctccagttctcgacctcctctccttcggttactcaaaggtcctcggaaagggtcgtctcccagaaatcccactcgtcg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
78 # tccgcgcccgatacttctccgcagaagccgaaaagaagatcaaggaagctggcggagtcgtccagttggtcggttag]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
79 # protein sequence = [MPTRLSNTRKHRGHVSAGHGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHPGYFGKVGMRYFHKQGNHFWKPTINLDKL
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
80 # WSLVPLEQREKYISNKKSDTAPVLDLLSFGYSKVLGKGRLPEIPLVVRARYFSAEAEKKIKEAGGVVQLVG]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
81 # end gene g2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
82 ###
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
83 # start gene g3
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
84 scaffold14 AUGUSTUS gene 8211 8576 0.98 + . ID=g3
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
85 scaffold14 AUGUSTUS transcript 8211 8576 0.98 + . ID=g3.t1;Parent=g3
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
86 scaffold14 AUGUSTUS start_codon 8211 8213 . + 0 Parent=g3.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
87 scaffold14 AUGUSTUS CDS 8211 8576 0.98 + 0 ID=g3.t1.cds;Parent=g3.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
88 scaffold14 AUGUSTUS stop_codon 8574 8576 . + 0 Parent=g3.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
89 # coding sequence = [atgtcaaaacaactctccacaaaggaagtttccacacacaaatcagtcgaagagggtctctggatcataatcgacaacg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
90 # aagtctacgacgtcacaaaattcatcgaagaacaccccggcggtccaaagatcctaaagcgcgtcggtgggaaagatgccagcaagcaattctggaag
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
91 # gcaagcaatcccatccccttacaaccatctcaccaaaaacatccactctcacaccctctaccatcatctgttcttataggtgcacgtgtgctaacctt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
92 # atccgcgtcacagtaccacagcgacaacgtcctaaaaaaatacaaacctaaactcatgatcggaagcgtcaaagaagacgccaagttatag]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
93 # protein sequence = [MSKQLSTKEVSTHKSVEEGLWIIIDNEVYDVTKFIEEHPGGPKILKRVGGKDASKQFWKASNPIPLQPSHQKHPLSHP
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
94 # LPSSVLIGARVLTLSASQYHSDNVLKKYKPKLMIGSVKEDAKL]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
95 # end gene g3
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
96 ###
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
97 # start gene g4
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
98 scaffold14 AUGUSTUS gene 9661 12081 . - . ID=g4
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
99 scaffold14 AUGUSTUS transcript 9661 12081 0.96 - . ID=g4.t1;Parent=g4
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
100 scaffold14 AUGUSTUS stop_codon 9661 9663 . - 0 Parent=g4.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
101 scaffold14 AUGUSTUS intron 10248 10299 0.97 - . Parent=g4.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
102 scaffold14 AUGUSTUS intron 10533 10666 0.99 - . Parent=g4.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
103 scaffold14 AUGUSTUS CDS 9661 10247 0.97 - 2 ID=g4.t1.cds;Parent=g4.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
104 scaffold14 AUGUSTUS CDS 10300 10532 0.98 - 1 ID=g4.t1.cds;Parent=g4.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
105 scaffold14 AUGUSTUS CDS 10667 12081 0.98 - 0 ID=g4.t1.cds;Parent=g4.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
106 scaffold14 AUGUSTUS start_codon 12079 12081 . - 0 Parent=g4.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
107 # coding sequence = [atggagacctatcaaggcaaggtccagacgccgcaggacgccatcatccttttcgaagcatgtcgactaggcctcacac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
108 # cgcgtgtgcagaggagactatcggagaaggagaggcaacagatcaaatctggctcggtattcgtgtgggatgaacgcgaagctggcatgaggaggtgg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
109 # actgacgggaaatcatggagcgcaagtcgcgtatctggtagctttctcacctatcgcgaaatggaaggaaagagaggagggactggcctgcctgcagg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
110 # cgctacaccacctgctctcaggaagtcaagcagtggaacgagaagctccgccaactcgaacaatggcggttcagaggacgacgaggaaggaccagacg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
111 # ggtacaagtacaaggccgacggactcatgaaacagtctttcagtatcaccacctcagacggccgacatcttcacctcatcagctacttcgcaagaaat
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
112 # cctgcacatccattaaaacaaccatccacggatccgcaactgcgcaatattgttccgcaaaaaggcatgtaccccgaggctacagtcaatgaagccac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
113 # gaacataccccctgtcactcgaggacctatgggggggacatcgccgcatcctcctgcgcatccgcctccacagatgtacgtcgcagcctatccatttc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
114 # caccgcctccaggataccaagcaggaccaatgcatcatcactaccctccacaaggctggccgccaagcccgggacatctaggccctggaggagtacca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
115 # cctggagcattttattatcctgctcctcctccgggatatgtttatccgaattcaccatacgcgccatccccatatccgtatggccaccctcctccgca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
116 # cgcgcaggagagaggtccacctccgccgcctcaatcaagtctgccccctctgagtggcccgatacatccctctgctgggcaatgggcccctccagctg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
117 # cgcgtacatcctcggccacgtatgcgcaaagcaggcctcctacatccttgcaagagagctacagccgctcggcagcagaacagagacaagaagagaca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
118 # tcgcgcgctcctggtccgcagctagcacccgtagttgccttccagaacaaacctccgactccaccagagagcaggaatggcgcgacaccgcctgcgaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
119 # gagctacccaaccgaccctctaccaacccgcgaaactaatactactactggacctacaaagacctttcccagtatcaaagcattgattaacggcgatg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
120 # tgataacatcgagacgagaagaggaccggacacgcactcgatctcgcagtcgaagcccgctaggaagcagaatccgcgatgttcccagtgcgatggca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
121 # gccggaggccgagagagagaccgtagcgatttgaagaggttggatgcccaacttctcaaatcttctggtctcgagtcttcagatggcaacgggaagct
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
122 # tgcacaaaaccaccctggtgcacacagcaagccaatttcgagaagtatcgatgttattgcaaaagtcatccccggtcatgttcttgccacgatgcctg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
123 # aaaatatcgaacttgaacctcaagacttcggaagatggccactacaatcgggtaacggacggtatacggagatacagccaaccccaacaagttccgaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
124 # gatgggcaaaagctgcaacttcagacgatgcccgacgataacttcgggcgggttatggaacctagcctgaaggaagttcttgatggcatgactggaag
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
125 # acagcgaggtctgggccagctcgggcaaatgcgtcttactactcaagatgtcaatagcaaacgatttgatctgtaccaagctctcaaatacgctacac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
126 # catcatccaccatcactcggattttgaatgaattgaagactggtgtcctgccctcagaaaagttgctgcgagaaacgaatatcggcgtggaagttgac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
127 # gggctgcgctggttgacaaaaatcccagttatcgcaaagctcagcaccgagatcgtcaatgaatggcgcactgttatagagtctggtcctcgtcctca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
128 # tccctcaaacgatgagatctttgggccttactggcggcttagcaacaatttttacgtttctaatcatggcagcgagagcccgtttcccagactatcac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
129 # ttggaaacgagaagcttggtcttggttccctgaacgacaacaagaatctcggaacagaaaatggaatgatacccaagaccaaggaggataggttataa]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
130 # protein sequence = [METYQGKVQTPQDAIILFEACRLGLTPRVQRRLSEKERQQIKSGSVFVWDEREAGMRRWTDGKSWSASRVSGSFLTYR
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
131 # EMEGKRGGTGLPAGATPPALRKSSSGTRSSANSNNGGSEDDEEGPDGYKYKADGLMKQSFSITTSDGRHLHLISYFARNPAHPLKQPSTDPQLRNIVP
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
132 # QKGMYPEATVNEATNIPPVTRGPMGGTSPHPPAHPPPQMYVAAYPFPPPPGYQAGPMHHHYPPQGWPPSPGHLGPGGVPPGAFYYPAPPPGYVYPNSP
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
133 # YAPSPYPYGHPPPHAQERGPPPPPQSSLPPLSGPIHPSAGQWAPPAARTSSATYAQSRPPTSLQESYSRSAAEQRQEETSRAPGPQLAPVVAFQNKPP
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
134 # TPPESRNGATPPAKSYPTDPLPTRETNTTTGPTKTFPSIKALINGDVITSRREEDRTRTRSRSRSPLGSRIRDVPSAMAAGGRERDRSDLKRLDAQLL
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
135 # KSSGLESSDGNGKLAQNHPGAHSKPISRSIDVIAKVIPGHVLATMPENIELEPQDFGRWPLQSGNGRYTEIQPTPTSSEDGQKLQLQTMPDDNFGRVM
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
136 # EPSLKEVLDGMTGRQRGLGQLGQMRLTTQDVNSKRFDLYQALKYATPSSTITRILNELKTGVLPSEKLLRETNIGVEVDGLRWLTKIPVIAKLSTEIV
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
137 # NEWRTVIESGPRPHPSNDEIFGPYWRLSNNFYVSNHGSESPFPRLSLGNEKLGLGSLNDNKNLGTENGMIPKTKEDRL]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
138 # end gene g4
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
139 ###
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
140 # start gene g5
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
141 scaffold14 AUGUSTUS gene 11112 11486 0.43 + . ID=g5
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
142 scaffold14 AUGUSTUS transcript 11112 11486 0.43 + . ID=g5.t1;Parent=g5
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
143 scaffold14 AUGUSTUS start_codon 11112 11114 . + 0 Parent=g5.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
144 scaffold14 AUGUSTUS CDS 11112 11486 0.43 + 0 ID=g5.t1.cds;Parent=g5.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
145 scaffold14 AUGUSTUS stop_codon 11484 11486 . + 0 Parent=g5.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
146 # coding sequence = [atgtacgcgcagctggaggggcccattgcccagcagagggatgtatcgggccactcagagggggcagacttgattgagg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
147 # cggcggaggtggacctctctcctgcgcgtgcggaggagggtggccatacggatatggggatggcgcgtatggtgaattcggataaacatatcccggag
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
148 # gaggagcaggataataaaatgctccaggtggtactcctccagggcctagatgtcccgggcttggcggccagccttgtggagggtagtgatgatgcatt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
149 # ggtcctgcttggtatcctggaggcggtggaaatggataggctgcgacgtacatctgtggaggcggatgcgcaggaggatgcggcgatgtcccccccat
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
150 # ag]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
151 # protein sequence = [MYAQLEGPIAQQRDVSGHSEGADLIEAAEVDLSPARAEEGGHTDMGMARMVNSDKHIPEEEQDNKMLQVVLLQGLDVP
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
152 # GLAASLVEGSDDALVLLGILEAVEMDRLRRTSVEADAQEDAAMSPP]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
153 # end gene g5
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
154 ###
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
155 # start gene g6
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
156 scaffold14 AUGUSTUS gene 22383 25038 0.97 + . ID=g6
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
157 scaffold14 AUGUSTUS transcript 22383 25038 0.97 + . ID=g6.t1;Parent=g6
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
158 scaffold14 AUGUSTUS start_codon 22383 22385 . + 0 Parent=g6.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
159 scaffold14 AUGUSTUS intron 22637 22690 1 + . Parent=g6.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
160 scaffold14 AUGUSTUS intron 22778 22830 1 + . Parent=g6.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
161 scaffold14 AUGUSTUS intron 24145 24194 1 + . Parent=g6.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
162 scaffold14 AUGUSTUS CDS 22383 22636 0.97 + 0 ID=g6.t1.cds;Parent=g6.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
163 scaffold14 AUGUSTUS CDS 22691 22777 1 + 1 ID=g6.t1.cds;Parent=g6.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
164 scaffold14 AUGUSTUS CDS 22831 24144 1 + 1 ID=g6.t1.cds;Parent=g6.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
165 scaffold14 AUGUSTUS CDS 24195 25038 1 + 1 ID=g6.t1.cds;Parent=g6.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
166 scaffold14 AUGUSTUS stop_codon 25036 25038 . + 0 Parent=g6.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
167 # coding sequence = [atgttgatcaggtcaaatccctccttgcattaccccattacaatcacgaagctcctggcgaaaccggatcagtccgtcg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
168 # acaggttcgctccgcttttctcctacacttataagactaccgtcactgaaggcaataagtatggcgatgagccaattcagttccagaaggacttcccc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
169 # gccgagtttcagtccgagcttgagggtaccctacgcgtttggaagataaagcccggcgatgttctgtacgaatctggaattcaactagtcgacattga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
170 # cgagccatgcactcacgatactgtttttggtggcctatgtgcgaattgtggccaagaaatggacaaactagataactatctaaccaccgagagagcct
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
171 # cccaacgcgccaccgtttttgcctcccacggaaacacagctctcctagtcagcaagaaggaagcaggtcggatcaatgaagaggctaaaagacgtctc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
172 # ttacagggtcgcaagctttcactagttgtggatctggatcaaaccatcattcacgccactgtcgatccaactgtggctgaatggcagcaggaccccgc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
173 # caacccaaactacgaggccgtaaagggggtgagacaattccagctggtagatgatggacctggaggtcgtggttgtaattactacatcaaattgcgac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
174 # ccggtctggaagagtttctggaagatatcgcgaagaagtacgaacttcacatctacaccatgggaaccagggcatacgcgcaaaagatcgctgagatt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
175 # gttgacccacaaaggagattttttggtgacaggatactcagcagagacgaaagtggaagcttgacgaacaagactttgcagcgcatatttcccgtcga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
176 # cacagacatggttgtcattattgacgatcgtggagatgtttggcaatggagtcccaacttaatcaaagtcactccctacgacttcttcgtcggaattg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
177 # gtgacatcaattctagctttttgccgaagaagaccgacagcatttccaaaaggactaggacacccccacccccaccgcctccagccgaaataccagag
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
178 # gacaaggagactaatgatagctttgaagaagcggagtcccccaccaacggtctagcaattgacacgaccgttatactggaagactccgatgcgccgac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
179 # cttggagacacagcttgtagctatggcaggaggagacgacccctccatcatagaagagaaaagtaatacacaggcggagacattagcggcgcaagtca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
180 # cagatcgccctttgatgaagaagcaggaaatgctagacaagcttgatgaagaggaggaagccaaagaaaacagtgaagaggagcgacctgtggaaacc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
181 # acacccgataccaaacaacgccacaatcttctacacgatgatgatgacgaattgcgacatcttcaggccaatctggagagcatccaccgactgtttta
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
182 # tgaagaatacgaccagaatatcatagcaagtccgccgaggctttctcagcttcggggcgagagatcagcgaaaaagactccggtcgacaaccttgagc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
183 # tcgtgccggacgtcaaagatatcatgccacggatgaaattggatgttttgaaacatgtggtcatatgcttcacgggggtcattcctcaaggcttaaac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
184 # catgaaacatctgacattggcatgtgggcacgatcttttggagccagggtgtcaccaaatttgacaaagtcgaccacgcatgttgttgcccacaaaga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
185 # tcgacgaacaagtaaagttcgacaggcggcaaggcatccgaacatcaaaatcgtcgcaaccagctggctactcgaatgctttgtgcagtgggttgcgg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
186 # ctcctgagggaccgcatacgatcaaagtggagagcgacgagcatgatgctcatgactcgctgccattcgaggagctagaagaggcttcgatgttaact
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
187 # ccatcagaagacggaggcgcggacgatgctgtcttgccttcggaagtggaggaagcggacgaagaacccaattccccagtcttggacatactagaaaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
188 # cgtcgaatggggtgatctagaagatgaaatgaaagacttctacgactcggaggacgaaactgaagctgaagataccgatgaaggccatgacgaaggca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
189 # tggagtcagatgcaagcgggaaaagtggacgcagctcacgaagcacctcgtcacgaaaagctaaacgcaagcgaaggacggaatcggttaacggcgac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
190 # tatgaagaagcgggcgaaagcacatcggcgttgcagaagcgacggaaaatggcggcagagcgtactacaggacttgccaacgtggagacgttggagaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
191 # tccaagtgggctacccagccccgacacgacaggaccagaggaggaagcaggagagaaggacaaaggcttatcgaatggcgcagaaggcgatgtgagcg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
192 # atgacattgatgaattcgagaaagacatgatggcaatgttcgacaaggacagtgatgccgaggattag]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
193 # protein sequence = [MLIRSNPSLHYPITITKLLAKPDQSVDRFAPLFSYTYKTTVTEGNKYGDEPIQFQKDFPAEFQSELEGTLRVWKIKPG
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
194 # DVLYESGIQLVDIDEPCTHDTVFGGLCANCGQEMDKLDNYLTTERASQRATVFASHGNTALLVSKKEAGRINEEAKRRLLQGRKLSLVVDLDQTIIHA
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
195 # TVDPTVAEWQQDPANPNYEAVKGVRQFQLVDDGPGGRGCNYYIKLRPGLEEFLEDIAKKYELHIYTMGTRAYAQKIAEIVDPQRRFFGDRILSRDESG
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
196 # SLTNKTLQRIFPVDTDMVVIIDDRGDVWQWSPNLIKVTPYDFFVGIGDINSSFLPKKTDSISKRTRTPPPPPPPAEIPEDKETNDSFEEAESPTNGLA
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
197 # IDTTVILEDSDAPTLETQLVAMAGGDDPSIIEEKSNTQAETLAAQVTDRPLMKKQEMLDKLDEEEEAKENSEEERPVETTPDTKQRHNLLHDDDDELR
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
198 # HLQANLESIHRLFYEEYDQNIIASPPRLSQLRGERSAKKTPVDNLELVPDVKDIMPRMKLDVLKHVVICFTGVIPQGLNHETSDIGMWARSFGARVSP
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
199 # NLTKSTTHVVAHKDRRTSKVRQAARHPNIKIVATSWLLECFVQWVAAPEGPHTIKVESDEHDAHDSLPFEELEEASMLTPSEDGGADDAVLPSEVEEA
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
200 # DEEPNSPVLDILENVEWGDLEDEMKDFYDSEDETEAEDTDEGHDEGMESDASGKSGRSSRSTSSRKAKRKRRTESVNGDYEEAGESTSALQKRRKMAA
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
201 # ERTTGLANVETLENPSGLPSPDTTGPEEEAGEKDKGLSNGAEGDVSDDIDEFEKDMMAMFDKDSDAED]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
202 # end gene g6
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
203 ###
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
204 # start gene g7
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
205 scaffold14 AUGUSTUS gene 25584 27469 0.98 + . ID=g7
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
206 scaffold14 AUGUSTUS transcript 25584 27469 0.98 + . ID=g7.t1;Parent=g7
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
207 scaffold14 AUGUSTUS start_codon 25584 25586 . + 0 Parent=g7.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
208 scaffold14 AUGUSTUS intron 25737 25813 0.99 + . Parent=g7.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
209 scaffold14 AUGUSTUS intron 26987 27043 1 + . Parent=g7.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
210 scaffold14 AUGUSTUS CDS 25584 25736 0.98 + 0 ID=g7.t1.cds;Parent=g7.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
211 scaffold14 AUGUSTUS CDS 25814 26986 1 + 0 ID=g7.t1.cds;Parent=g7.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
212 scaffold14 AUGUSTUS CDS 27044 27469 1 + 0 ID=g7.t1.cds;Parent=g7.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
213 scaffold14 AUGUSTUS stop_codon 27467 27469 . + 0 Parent=g7.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
214 # coding sequence = [atgaccacagacaaccccgaggctaagatggtggaagtggctcagccaacgaagatggccgtcgtgccagtcgagaagg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
215 # aggttccgaaacgtccttccaagttgcgcttcatggacctctcggtcgacatcaagacattgattgtcagccatgtccatcggccaaccgaactcaag
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
216 # aatctctgcctcacctgctcgcagatgcacaagattaccgtccggaaactgtatcacgaagtcacgctagaggtcggttcgtctaccgatgccaaact
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
217 # cacctccttcatcaatccccgcaatatcggcctccctcacattcggaagctcgacctatacctggctgaggttgccgacaagtgcaaccagctacaac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
218 # aggctcactttgccatacggatgatactagagttccttccagaaaacatactcgagaaattctcatggcatccttggtcgcctttcctggccgacaat
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
219 # ttggttctactgtacaagaagcagcgacggatggagtggttagaaggcatagctctggataggaatgttctacccgagttggaaaagcaatccgactt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
220 # tgaccagatattcacaaggacgcggcggctaggactatatccggattcgcgagatgtgctcaatttctgcgccaatctgatcaagcggacaaaaaagg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
221 # tcgagaagattacgctgcatgctagtttcgatgaggactcagatcggactccaattcctagccgggagctgaatgactccagcacagatcttggtttg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
222 # ataactaggaccatgttcggccatatggagccattcgagaaatgcacacctctgtcgttgaaggatcttacactgcaaaagatcaatctccgttatgc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
223 # cgccaattcgtattgcaaattcattgatttccgcgtcatgaaggcgctccgtatatttgggtgtccgggtgccgactccctctttgccgagctatcaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
224 # aatcgcataagttaccagagcgcttggagactctcgaattcaagcacgatgataaccaagaaaacgacgcattgaatgctttggacggcttcttgaaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
225 # ctggtttctggcatcaaagtgctcaccatggatatctgctatgcaaagcaattaccgagcgcagatggaatcattcggcattctcgaacgttgaggga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
226 # attgaatgtgcacggctctcgtggagacggagaggaagaggaacttatcattgactttgacgatttcgagaagatatgcaagtcttgctcgtcaattg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
227 # aacagctgtcaatggcgttcccgacgaccagtctgatccgaccgatttcagactcatttcaagcattcgagaacgcgttgggagatctcgcgaacctg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
228 # attactctcaacataacgacctggcctacgaacacaccgtctacctcccgcctcccacgtaaaacctacgaaatcctcctccaatccctcgcaaactc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
229 # gggtttcgaacactcgatccaccacgcatcctcgcgcacccctcctcggtcctcgaaactcgccgtcatcgctttcggttcctctgatcgcgtatacg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
230 # atcgcgaagactccaagaaccagattatatttgtgaagggtaggcagactgatcctttcggaggggaaaagccattggcggtgcaggtcggttggtgt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
231 # ctaaggaagtttgtggagccgaggagtgatgtgcttgatttctcgttggcgaggagttgtagaccgcctactagggaaccgccggcgagtgaggatag
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
232 # tgagtaa]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
233 # protein sequence = [MTTDNPEAKMVEVAQPTKMAVVPVEKEVPKRPSKLRFMDLSVDIKTLIVSHVHRPTELKNLCLTCSQMHKITVRKLYH
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
234 # EVTLEVGSSTDAKLTSFINPRNIGLPHIRKLDLYLAEVADKCNQLQQAHFAIRMILEFLPENILEKFSWHPWSPFLADNLVLLYKKQRRMEWLEGIAL
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
235 # DRNVLPELEKQSDFDQIFTRTRRLGLYPDSRDVLNFCANLIKRTKKVEKITLHASFDEDSDRTPIPSRELNDSSTDLGLITRTMFGHMEPFEKCTPLS
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
236 # LKDLTLQKINLRYAANSYCKFIDFRVMKALRIFGCPGADSLFAELSKSHKLPERLETLEFKHDDNQENDALNALDGFLKLVSGIKVLTMDICYAKQLP
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
237 # SADGIIRHSRTLRELNVHGSRGDGEEEELIIDFDDFEKICKSCSSIEQLSMAFPTTSLIRPISDSFQAFENALGDLANLITLNITTWPTNTPSTSRLP
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
238 # RKTYEILLQSLANSGFEHSIHHASSRTPPRSSKLAVIAFGSSDRVYDREDSKNQIIFVKGRQTDPFGGEKPLAVQVGWCLRKFVEPRSDVLDFSLARS
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
239 # CRPPTREPPASEDSE]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
240 # end gene g7
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
241 ###
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
242 # start gene g8
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
243 scaffold14 AUGUSTUS gene 29180 30106 . - . ID=g8
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
244 scaffold14 AUGUSTUS transcript 29180 30106 0.76 - . ID=g8.t1;Parent=g8
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
245 scaffold14 AUGUSTUS stop_codon 29180 29182 . - 0 Parent=g8.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
246 scaffold14 AUGUSTUS CDS 29180 30106 0.76 - 0 ID=g8.t1.cds;Parent=g8.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
247 scaffold14 AUGUSTUS start_codon 30104 30106 . - 0 Parent=g8.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
248 # coding sequence = [atgttccgagctcgcgacagtctgcgcaagctacgtagccagggtcttccatcaaccaaaatttggctccctactccta
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
249 # gaagccagagacttctagcatccttcgccaaatctcgcaataccttcccatggcattacgctgtccctgcagccatgggcgcggctgtgttctcgttt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
250 # gtctttatcgcccaaagtcagaaaggttcactgccgtatccaggaggttgctgttctcgggatcggaagcctctactcgtatcatattacacagataa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
251 # accctgcactcttagggatgtgacagatattgcaggtctcatggctgcgatgtgggtatccgagcgcataaacgaacaatcatcatcgaaggatgcac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
252 # tcactgtcaaggacgaccttcttttcgatattgctagtcgcttggctttgctcagaaatggcggagtcgagggaagttctctaggaaagacagaatgc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
253 # cttcaaatgtttgccgagtcggaatcgaatcgcttgaaagactcaccgtttggtcgagagagttgcgatctcagcctgatgagtggggacgccaaaac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
254 # tgcctgggttgctgacagcattgggtacttcatcttttctgaccgcatggatgagccacatccgttatcaaagctggacgactggatagaccacttaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
255 # tcgatcggggttcctttgtggaatcgaagttcatgactgtcttgaatgatgtagagagagtaatcatgattgagatgtacaaggaggctcgaaaggca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
256 # tatcaaaatgcagaaactcgcaaggaaatggaagctatgggacttccagttgcgtctgctcaagatatgatgctgatagatgcgatgatgcatgttta
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
257 # tcggcgactcagcggagatagggttctcaaggacgtgggacacgaagatgatgttggtcattga]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
258 # protein sequence = [MFRARDSLRKLRSQGLPSTKIWLPTPRSQRLLASFAKSRNTFPWHYAVPAAMGAAVFSFVFIAQSQKGSLPYPGGCCS
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
259 # RDRKPLLVSYYTDKPCTLRDVTDIAGLMAAMWVSERINEQSSSKDALTVKDDLLFDIASRLALLRNGGVEGSSLGKTECLQMFAESESNRLKDSPFGR
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
260 # ESCDLSLMSGDAKTAWVADSIGYFIFSDRMDEPHPLSKLDDWIDHLIDRGSFVESKFMTVLNDVERVIMIEMYKEARKAYQNAETRKEMEAMGLPVAS
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
261 # AQDMMLIDAMMHVYRRLSGDRVLKDVGHEDDVGH]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
262 # end gene g8
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
263 ###
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
264 # start gene g9
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
265 scaffold14 AUGUSTUS gene 30672 31824 1 + . ID=g9
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
266 scaffold14 AUGUSTUS transcript 30672 31824 1 + . ID=g9.t1;Parent=g9
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
267 scaffold14 AUGUSTUS start_codon 30672 30674 . + 0 Parent=g9.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
268 scaffold14 AUGUSTUS intron 31248 31299 1 + . Parent=g9.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
269 scaffold14 AUGUSTUS CDS 30672 31247 1 + 0 ID=g9.t1.cds;Parent=g9.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
270 scaffold14 AUGUSTUS CDS 31300 31824 1 + 0 ID=g9.t1.cds;Parent=g9.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
271 scaffold14 AUGUSTUS stop_codon 31822 31824 . + 0 Parent=g9.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
272 # coding sequence = [atgccaatcgaaaacatccaaaacccatccgcaaaacactggaactgcacaaacaccctcaacccctccatcctcccct
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
273 # tccaccaatctctccccgactacgccataaccccgctcacccccctagaagctctagcagaagacctaggtataggccacatctacgtcaaagacgaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
274 # ggcacgcgtttcggtctgcccgccttcaaaatcctaggcgcctcatgggcggtttaccgagccatcgcggctcaattgggtaaaccgacgacaacatc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
275 # actggatgatttatgcaatgctgccgaggggaggggaattcgaatcgtcacgacatcagagggaaactggggtcgagcggttgctcgaatggggaggt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
276 # atcttggggttgcggttacggtttatgtccctcggtatatggatgaagcgacacgggggaagatttcaagggaaggcgctgaggttatcctacataaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
277 # ggcgaatacgacgattgtctatttacttgtcgacacgtctccgaggaaacgggggctcttcttgttttggatacgagttttgatgggtacacggagat
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
278 # accgcagtgggtgacggatgggtactcttctatgcttgaagaagtggattcgcaactccgggctgcgattgacagaccggcgacccatgcgattgctt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
279 # ctgttggtgtggggtcgtgggctcatgccgtggtggctcattataaatccaaagatccgactgcagctgttgcgactgttgagcctaagacggcgaat
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
280 # tgtcttgctacctctctcgacgccggcaagattatttcagtcaagactgacgtcaccattatgaacggcatgaattgcggaactgtgtctgacattgc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
281 # atggccgtatctgagagatggtgtcgatgcaagtgttaccgtcagtgagatgcaggcacacgaagccgttctgtatctgagagcgcatggcgtgaatg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
282 # ctggaccttgtggagcggcaccactcgccgcattgagggagttgaagaagttgaactggcttgggcttgggtcggatagcgtcgtggtactttattgc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
283 # acagaggccgcaagagcgtataaggagcctaccagcgagtaa]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
284 # protein sequence = [MPIENIQNPSAKHWNCTNTLNPSILPFHQSLPDYAITPLTPLEALAEDLGIGHIYVKDEGTRFGLPAFKILGASWAVY
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
285 # RAIAAQLGKPTTTSLDDLCNAAEGRGIRIVTTSEGNWGRAVARMGRYLGVAVTVYVPRYMDEATRGKISREGAEVILHKGEYDDCLFTCRHVSEETGA
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
286 # LLVLDTSFDGYTEIPQWVTDGYSSMLEEVDSQLRAAIDRPATHAIASVGVGSWAHAVVAHYKSKDPTAAVATVEPKTANCLATSLDAGKIISVKTDVT
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
287 # IMNGMNCGTVSDIAWPYLRDGVDASVTVSEMQAHEAVLYLRAHGVNAGPCGAAPLAALRELKKLNWLGLGSDSVVVLYCTEAARAYKEPTSE]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
288 # end gene g9
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
289 ###
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
290 # start gene g10
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
291 scaffold14 AUGUSTUS gene 31923 33129 . - . ID=g10
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
292 scaffold14 AUGUSTUS transcript 31923 33129 0.76 - . ID=g10.t1;Parent=g10
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
293 scaffold14 AUGUSTUS stop_codon 31923 31925 . - 0 Parent=g10.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
294 scaffold14 AUGUSTUS intron 32358 32419 1 - . Parent=g10.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
295 scaffold14 AUGUSTUS intron 32848 32915 0.99 - . Parent=g10.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
296 scaffold14 AUGUSTUS CDS 31923 32357 1 - 0 ID=g10.t1.cds;Parent=g10.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
297 scaffold14 AUGUSTUS CDS 32420 32847 0.94 - 2 ID=g10.t1.cds;Parent=g10.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
298 scaffold14 AUGUSTUS CDS 32916 33129 0.82 - 0 ID=g10.t1.cds;Parent=g10.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
299 scaffold14 AUGUSTUS start_codon 33127 33129 . - 0 Parent=g10.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
300 # coding sequence = [atgtctcaccatgagtcgtacgactcgcacaagatgccaaatatgcatgtgcaacagggtcccgatatggccatgaccg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
301 # atgctttgcgtaaacaccttacgcgccacattctatcaccgggacctgtcacgcagcgacggttggattttgagcatgcacgaccgacgtggctgagg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
302 # gagatgtttgcagaagccactggtgtctttttctacgtatatcccgggatcgcagcaacagcagctttcatcttgcaaaaagagagccctgctttggg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
303 # atccgttttcacgatagggctggcttatggtataggcgtttcccttgggattatttgttgcgcaggtacatcggggggacatttcaatccatccatca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
304 # ccatctgcttcgccatttggcaaggatttccgtggagaaaggtgccctactacattttcgcgcagatagctggcgccttcttcgccggcttgattctg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
305 # tacgggcagtaccatcagcaaatcgaggtttatagattgggactggagaagttggggatgcctgaggtttttatggggagtccggccagtatttttac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
306 # gtcatatccgctggggagtcagacgaatcaggcatggttggttttgattgagttttttgttgatgcgtttcttggcttcgccatctgggccgtcctcg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
307 # atccatctaatcccttcatctcagctggcatcgcaccattcgtcatcggtctcgcctacagtctcatgatatggggttttgcaagcgtaaccatcagt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
308 # accaatcttgcccgagatctaggcgggcgccttgtagccatgttgttttacggttccgatgccttcacgtacatgtcatattggtggattggcatctt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
309 # catcaatatacctgccacgatttttgcgacgtgcttttacgagttggtgtttcgggatagtttggataagattgcgcttggacatgcgcagcatgagg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
310 # atggagtggatgggattgcgagacatttgagtcagacggggttgatggatccgtatccagaggagagctcgttgaggaggaaggagtatgcgagtcag
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
311 # tcttcgaggatatcttga]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
312 # protein sequence = [MSHHESYDSHKMPNMHVQQGPDMAMTDALRKHLTRHILSPGPVTQRRLDFEHARPTWLREMFAEATGVFFYVYPGIAA
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
313 # TAAFILQKESPALGSVFTIGLAYGIGVSLGIICCAGTSGGHFNPSITICFAIWQGFPWRKVPYYIFAQIAGAFFAGLILYGQYHQQIEVYRLGLEKLG
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
314 # MPEVFMGSPASIFTSYPLGSQTNQAWLVLIEFFVDAFLGFAIWAVLDPSNPFISAGIAPFVIGLAYSLMIWGFASVTISTNLARDLGGRLVAMLFYGS
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
315 # DAFTYMSYWWIGIFINIPATIFATCFYELVFRDSLDKIALGHAQHEDGVDGIARHLSQTGLMDPYPEESSLRRKEYASQSSRIS]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
316 scaffold14 AUGUSTUS transcript 31923 33087 0.11 - . ID=g10.t2;Parent=g10
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
317 scaffold14 AUGUSTUS stop_codon 31923 31925 . - 0 Parent=g10.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
318 scaffold14 AUGUSTUS intron 32358 32419 1 - . Parent=g10.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
319 scaffold14 AUGUSTUS intron 32848 32915 0.99 - . Parent=g10.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
320 scaffold14 AUGUSTUS CDS 31923 32357 1 - 0 ID=g10.t2.cds;Parent=g10.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
321 scaffold14 AUGUSTUS CDS 32420 32847 0.94 - 2 ID=g10.t2.cds;Parent=g10.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
322 scaffold14 AUGUSTUS CDS 32916 33087 0.11 - 0 ID=g10.t2.cds;Parent=g10.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
323 scaffold14 AUGUSTUS start_codon 33085 33087 . - 0 Parent=g10.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
324 # coding sequence = [atgcatgtgcaacagggtcccgatatggccatgaccgatgctttgcgtaaacaccttacgcgccacattctatcaccgg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
325 # gacctgtcacgcagcgacggttggattttgagcatgcacgaccgacgtggctgagggagatgtttgcagaagccactggtgtctttttctacgtatat
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
326 # cccgggatcgcagcaacagcagctttcatcttgcaaaaagagagccctgctttgggatccgttttcacgatagggctggcttatggtataggcgtttc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
327 # ccttgggattatttgttgcgcaggtacatcggggggacatttcaatccatccatcaccatctgcttcgccatttggcaaggatttccgtggagaaagg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
328 # tgccctactacattttcgcgcagatagctggcgccttcttcgccggcttgattctgtacgggcagtaccatcagcaaatcgaggtttatagattggga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
329 # ctggagaagttggggatgcctgaggtttttatggggagtccggccagtatttttacgtcatatccgctggggagtcagacgaatcaggcatggttggt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
330 # tttgattgagttttttgttgatgcgtttcttggcttcgccatctgggccgtcctcgatccatctaatcccttcatctcagctggcatcgcaccattcg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
331 # tcatcggtctcgcctacagtctcatgatatggggttttgcaagcgtaaccatcagtaccaatcttgcccgagatctaggcgggcgccttgtagccatg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
332 # ttgttttacggttccgatgccttcacgtacatgtcatattggtggattggcatcttcatcaatatacctgccacgatttttgcgacgtgcttttacga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
333 # gttggtgtttcgggatagtttggataagattgcgcttggacatgcgcagcatgaggatggagtggatgggattgcgagacatttgagtcagacggggt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
334 # tgatggatccgtatccagaggagagctcgttgaggaggaaggagtatgcgagtcagtcttcgaggatatcttga]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
335 # protein sequence = [MHVQQGPDMAMTDALRKHLTRHILSPGPVTQRRLDFEHARPTWLREMFAEATGVFFYVYPGIAATAAFILQKESPALG
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
336 # SVFTIGLAYGIGVSLGIICCAGTSGGHFNPSITICFAIWQGFPWRKVPYYIFAQIAGAFFAGLILYGQYHQQIEVYRLGLEKLGMPEVFMGSPASIFT
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
337 # SYPLGSQTNQAWLVLIEFFVDAFLGFAIWAVLDPSNPFISAGIAPFVIGLAYSLMIWGFASVTISTNLARDLGGRLVAMLFYGSDAFTYMSYWWIGIF
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
338 # INIPATIFATCFYELVFRDSLDKIALGHAQHEDGVDGIARHLSQTGLMDPYPEESSLRRKEYASQSSRIS]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
339 # end gene g10
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
340 ###
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
341 # start gene g11
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
342 scaffold14 AUGUSTUS gene 34994 38214 . - . ID=g11
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
343 scaffold14 AUGUSTUS transcript 34994 38214 0.35 - . ID=g11.t1;Parent=g11
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
344 scaffold14 AUGUSTUS stop_codon 34994 34996 . - 0 Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
345 scaffold14 AUGUSTUS intron 35009 35061 1 - . Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
346 scaffold14 AUGUSTUS intron 35522 35657 0.87 - . Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
347 scaffold14 AUGUSTUS intron 35799 35851 1 - . Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
348 scaffold14 AUGUSTUS intron 36061 36125 1 - . Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
349 scaffold14 AUGUSTUS intron 36290 36340 1 - . Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
350 scaffold14 AUGUSTUS intron 36978 37202 0.99 - . Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
351 scaffold14 AUGUSTUS intron 37920 37965 0.89 - . Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
352 scaffold14 AUGUSTUS intron 38139 38192 0.47 - . Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
353 scaffold14 AUGUSTUS CDS 34994 35008 1 - 0 ID=g11.t1.cds;Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
354 scaffold14 AUGUSTUS CDS 35062 35521 1 - 1 ID=g11.t1.cds;Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
355 scaffold14 AUGUSTUS CDS 35658 35798 0.87 - 1 ID=g11.t1.cds;Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
356 scaffold14 AUGUSTUS CDS 35852 36060 1 - 0 ID=g11.t1.cds;Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
357 scaffold14 AUGUSTUS CDS 36126 36289 1 - 2 ID=g11.t1.cds;Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
358 scaffold14 AUGUSTUS CDS 36341 36977 0.88 - 0 ID=g11.t1.cds;Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
359 scaffold14 AUGUSTUS CDS 37203 37919 0.89 - 0 ID=g11.t1.cds;Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
360 scaffold14 AUGUSTUS CDS 37966 38138 0.43 - 2 ID=g11.t1.cds;Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
361 scaffold14 AUGUSTUS CDS 38193 38214 0.96 - 0 ID=g11.t1.cds;Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
362 scaffold14 AUGUSTUS start_codon 38212 38214 . - 0 Parent=g11.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
363 # coding sequence = [atgtctagatactctcgcattgttaacatagacttggtcataggagagagcggccgctacgatgaagacgctcctaacc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
364 # gctacagtcggcctgatgcggtgccgcttcaacatattcccagtcatgaggactttgctacggatggacaacattcctacatggatacccgggatcga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
365 # ctcgccgcccagccgacctactccgttgataatctagcttactcttatggacttagagaagcatacgagtcaacattccagaacatcccagagcatcc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
366 # gggccgccagcattatgattcacatccagctgaagaagcagatccagcgtattatgacgatgatgataccagaccaatgctagatcgtcaccacagta
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
367 # acgatgccagtagttcttcggtgacactgacagtgcaggtcccgagatgggccaccatccagtatgtcccattgttcaaaggcaacctggttttggac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
368 # tgtccagtcccatcaaaattggtcaatcagttggcgacaggggatgaacagcctcgtgaatctacgcacatgagatattcagcagcaacttgcgatcc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
369 # cgccgattttcttgacaaccgattcacattgcgccaaaaattatatcaacaaccgagagcagttgaactcttcatcgttgtcacaatgtacaatgaag
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
370 # acgatgcgctgctggcgagaacattgatagggattttccagaatgtcaattacatggaaagtttgagggatagcacgatgtggggtgctaacgcctgg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
371 # aagaagatagtagtgtgcatcgttagtgacggaatcgcgaagatcaatccccgttctgcagcacttcttgctggtctgggtgtctttcagcaaggcat
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
372 # tgccaaagctaagatcaacaaactcgagaccgaggcccatatattcgagtacacaacgcaaatggaaccagtaatgagaggcgagacagtctccgtcc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
373 # agaagggcaacactccggttcaactgctcttctgcttgaagcaaaagaatgcgcagaagatcaattcgcatcgctggttctttcaagcctttggcaga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
374 # tgtctcgagcctaatatttgtgtactgctcgatgctggaaccaaacctggtaagcactcgatattcaaactttggaacgttttcgatcgaaacagaca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
375 # ttgtgccggcgcttgtggagagatcaaggcagacttaggaagagggggtaaaaacttgttgaatccattggtcgcgactcaaaactttgaatataaga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
376 # tgtcgaatatacttgataagcctctggaatcagctttcggcttcatctcggtccttccaggagccttctctgcttataggtacgaggctcttcaagga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
377 # gaacccatggtcaaatattttgctggagagaaaatgcacaataacagcaatttctttactgcgaatatgtacctggctgaggaccgaattctatgtta
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
378 # cgagctggtggcaaagaagggcagcaaatgggttctccaatacgtaaagaactccacaggagaaacagatgttccgacagaagtgcctgacttcatct
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
379 # cgcaacgtcggagatggcttaacggtagtctcttcgctgctgtttacaccgtggtccatttctggaaaatctggcaatccggccacgggtttgttcga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
380 # aagtgcatgctgcagatcgaagtagtctaccaggtcattagcatgatctttgcttggttcgccttgggcaacttttacttggtcttcaaaattcttgt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
381 # gggctcgctgggtgatccgactttacttggaaaagcaggtttggtgctatcggtattcttcgagtggtcttatgtcatctgcctcatcgcttgcttca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
382 # ttctcgccttgggcaatacgccgaaaggaacgaagaaggtctatgttggcatgaccatctattgggcaatcgtgatgacttacctcatgtttgccact
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
383 # gtctatctcagcgtcaaatctgtccagtcggaaatcaaagatggctttaagattggcgatttgctgacgaataagacctttgcgacacttattctctc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
384 # tatgctttccacctacgtcttgtgtcaaaccctcaaatgtatcggctcatttgctaacaacacaatagggggcactaaaggcgccaacgatgcacctg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
385 # gaggcggttcagtcgcctctggaaaagacggcaaagcaggtgtcgagcttccatccgatccagacgctcaatacaagaaagagctcgaagtcctcgcc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
386 # gaggcacgcaaagaagaagagtcgaaaacaagcgacgaagatgtcaagaaattctactacgcttctgttcgcagctggatcgtgatggcgtggatatt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
387 # cagcaacttgtcgttgatcacccttgtgatgaaagccggttcggtcgggatcattaccaagaccaagacgagtgaggaggaggcgcagcgcaagaact
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
388 # ctgacctttacctctacattatcttgtggagtgtagcgggactcagtgcgttcagatttgttggctcggtttggttcttgattcatagaaagtttgct
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
389 # gggatctga]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
390 # protein sequence = [MSRYSRIVNIDLVIGESGRYDEDAPNRYSRPDAVPLQHIPSHEDFATDGQHSYMDTRDRLAAQPTYSVDNLAYSYGLR
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
391 # EAYESTFQNIPEHPGRQHYDSHPAEEADPAYYDDDDTRPMLDRHHSNDASSSSVTLTVQVPRWATIQYVPLFKGNLVLDCPVPSKLVNQLATGDEQPR
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
392 # ESTHMRYSAATCDPADFLDNRFTLRQKLYQQPRAVELFIVVTMYNEDDALLARTLIGIFQNVNYMESLRDSTMWGANAWKKIVVCIVSDGIAKINPRS
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
393 # AALLAGLGVFQQGIAKAKINKLETEAHIFEYTTQMEPVMRGETVSVQKGNTPVQLLFCLKQKNAQKINSHRWFFQAFGRCLEPNICVLLDAGTKPGKH
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
394 # SIFKLWNVFDRNRHCAGACGEIKADLGRGGKNLLNPLVATQNFEYKMSNILDKPLESAFGFISVLPGAFSAYRYEALQGEPMVKYFAGEKMHNNSNFF
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
395 # TANMYLAEDRILCYELVAKKGSKWVLQYVKNSTGETDVPTEVPDFISQRRRWLNGSLFAAVYTVVHFWKIWQSGHGFVRKCMLQIEVVYQVISMIFAW
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
396 # FALGNFYLVFKILVGSLGDPTLLGKAGLVLSVFFEWSYVICLIACFILALGNTPKGTKKVYVGMTIYWAIVMTYLMFATVYLSVKSVQSEIKDGFKIG
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
397 # DLLTNKTFATLILSMLSTYVLCQTLKCIGSFANNTIGGTKGANDAPGGGSVASGKDGKAGVELPSDPDAQYKKELEVLAEARKEEESKTSDEDVKKFY
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
398 # YASVRSWIVMAWIFSNLSLITLVMKAGSVGIITKTKTSEEEAQRKNSDLYLYIILWSVAGLSAFRFVGSVWFLIHRKFAGI]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
399 scaffold14 AUGUSTUS transcript 34994 38214 0.17 - . ID=g11.t2;Parent=g11
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
400 scaffold14 AUGUSTUS stop_codon 34994 34996 . - 0 Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
401 scaffold14 AUGUSTUS intron 35009 35061 1 - . Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
402 scaffold14 AUGUSTUS intron 35522 35657 0.87 - . Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
403 scaffold14 AUGUSTUS intron 35799 35851 1 - . Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
404 scaffold14 AUGUSTUS intron 36061 36125 1 - . Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
405 scaffold14 AUGUSTUS intron 36290 36340 1 - . Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
406 scaffold14 AUGUSTUS intron 36978 37202 0.99 - . Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
407 scaffold14 AUGUSTUS intron 37920 37965 0.89 - . Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
408 scaffold14 AUGUSTUS intron 38118 38192 0.26 - . Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
409 scaffold14 AUGUSTUS CDS 34994 35008 1 - 0 ID=g11.t2.cds;Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
410 scaffold14 AUGUSTUS CDS 35062 35521 1 - 1 ID=g11.t2.cds;Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
411 scaffold14 AUGUSTUS CDS 35658 35798 0.87 - 1 ID=g11.t2.cds;Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
412 scaffold14 AUGUSTUS CDS 35852 36060 1 - 0 ID=g11.t2.cds;Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
413 scaffold14 AUGUSTUS CDS 36126 36289 1 - 2 ID=g11.t2.cds;Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
414 scaffold14 AUGUSTUS CDS 36341 36977 0.88 - 0 ID=g11.t2.cds;Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
415 scaffold14 AUGUSTUS CDS 37203 37919 0.89 - 0 ID=g11.t2.cds;Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
416 scaffold14 AUGUSTUS CDS 37966 38117 0.25 - 2 ID=g11.t2.cds;Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
417 scaffold14 AUGUSTUS CDS 38193 38214 0.96 - 0 ID=g11.t2.cds;Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
418 scaffold14 AUGUSTUS start_codon 38212 38214 . - 0 Parent=g11.t2
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
419 # coding sequence = [atgtctagatactctcgcattggagagagcggccgctacgatgaagacgctcctaaccgctacagtcggcctgatgcgg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
420 # tgccgcttcaacatattcccagtcatgaggactttgctacggatggacaacattcctacatggatacccgggatcgactcgccgcccagccgacctac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
421 # tccgttgataatctagcttactcttatggacttagagaagcatacgagtcaacattccagaacatcccagagcatccgggccgccagcattatgattc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
422 # acatccagctgaagaagcagatccagcgtattatgacgatgatgataccagaccaatgctagatcgtcaccacagtaacgatgccagtagttcttcgg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
423 # tgacactgacagtgcaggtcccgagatgggccaccatccagtatgtcccattgttcaaaggcaacctggttttggactgtccagtcccatcaaaattg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
424 # gtcaatcagttggcgacaggggatgaacagcctcgtgaatctacgcacatgagatattcagcagcaacttgcgatcccgccgattttcttgacaaccg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
425 # attcacattgcgccaaaaattatatcaacaaccgagagcagttgaactcttcatcgttgtcacaatgtacaatgaagacgatgcgctgctggcgagaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
426 # cattgatagggattttccagaatgtcaattacatggaaagtttgagggatagcacgatgtggggtgctaacgcctggaagaagatagtagtgtgcatc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
427 # gttagtgacggaatcgcgaagatcaatccccgttctgcagcacttcttgctggtctgggtgtctttcagcaaggcattgccaaagctaagatcaacaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
428 # actcgagaccgaggcccatatattcgagtacacaacgcaaatggaaccagtaatgagaggcgagacagtctccgtccagaagggcaacactccggttc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
429 # aactgctcttctgcttgaagcaaaagaatgcgcagaagatcaattcgcatcgctggttctttcaagcctttggcagatgtctcgagcctaatatttgt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
430 # gtactgctcgatgctggaaccaaacctggtaagcactcgatattcaaactttggaacgttttcgatcgaaacagacattgtgccggcgcttgtggaga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
431 # gatcaaggcagacttaggaagagggggtaaaaacttgttgaatccattggtcgcgactcaaaactttgaatataagatgtcgaatatacttgataagc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
432 # ctctggaatcagctttcggcttcatctcggtccttccaggagccttctctgcttataggtacgaggctcttcaaggagaacccatggtcaaatatttt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
433 # gctggagagaaaatgcacaataacagcaatttctttactgcgaatatgtacctggctgaggaccgaattctatgttacgagctggtggcaaagaaggg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
434 # cagcaaatgggttctccaatacgtaaagaactccacaggagaaacagatgttccgacagaagtgcctgacttcatctcgcaacgtcggagatggctta
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
435 # acggtagtctcttcgctgctgtttacaccgtggtccatttctggaaaatctggcaatccggccacgggtttgttcgaaagtgcatgctgcagatcgaa
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
436 # gtagtctaccaggtcattagcatgatctttgcttggttcgccttgggcaacttttacttggtcttcaaaattcttgtgggctcgctgggtgatccgac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
437 # tttacttggaaaagcaggtttggtgctatcggtattcttcgagtggtcttatgtcatctgcctcatcgcttgcttcattctcgccttgggcaatacgc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
438 # cgaaaggaacgaagaaggtctatgttggcatgaccatctattgggcaatcgtgatgacttacctcatgtttgccactgtctatctcagcgtcaaatct
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
439 # gtccagtcggaaatcaaagatggctttaagattggcgatttgctgacgaataagacctttgcgacacttattctctctatgctttccacctacgtctt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
440 # gtgtcaaaccctcaaatgtatcggctcatttgctaacaacacaatagggggcactaaaggcgccaacgatgcacctggaggcggttcagtcgcctctg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
441 # gaaaagacggcaaagcaggtgtcgagcttccatccgatccagacgctcaatacaagaaagagctcgaagtcctcgccgaggcacgcaaagaagaagag
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
442 # tcgaaaacaagcgacgaagatgtcaagaaattctactacgcttctgttcgcagctggatcgtgatggcgtggatattcagcaacttgtcgttgatcac
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
443 # ccttgtgatgaaagccggttcggtcgggatcattaccaagaccaagacgagtgaggaggaggcgcagcgcaagaactctgacctttacctctacatta
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
444 # tcttgtggagtgtagcgggactcagtgcgttcagatttgttggctcggtttggttcttgattcatagaaagtttgctgggatctga]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
445 # protein sequence = [MSRYSRIGESGRYDEDAPNRYSRPDAVPLQHIPSHEDFATDGQHSYMDTRDRLAAQPTYSVDNLAYSYGLREAYESTF
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
446 # QNIPEHPGRQHYDSHPAEEADPAYYDDDDTRPMLDRHHSNDASSSSVTLTVQVPRWATIQYVPLFKGNLVLDCPVPSKLVNQLATGDEQPRESTHMRY
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
447 # SAATCDPADFLDNRFTLRQKLYQQPRAVELFIVVTMYNEDDALLARTLIGIFQNVNYMESLRDSTMWGANAWKKIVVCIVSDGIAKINPRSAALLAGL
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
448 # GVFQQGIAKAKINKLETEAHIFEYTTQMEPVMRGETVSVQKGNTPVQLLFCLKQKNAQKINSHRWFFQAFGRCLEPNICVLLDAGTKPGKHSIFKLWN
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
449 # VFDRNRHCAGACGEIKADLGRGGKNLLNPLVATQNFEYKMSNILDKPLESAFGFISVLPGAFSAYRYEALQGEPMVKYFAGEKMHNNSNFFTANMYLA
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
450 # EDRILCYELVAKKGSKWVLQYVKNSTGETDVPTEVPDFISQRRRWLNGSLFAAVYTVVHFWKIWQSGHGFVRKCMLQIEVVYQVISMIFAWFALGNFY
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
451 # LVFKILVGSLGDPTLLGKAGLVLSVFFEWSYVICLIACFILALGNTPKGTKKVYVGMTIYWAIVMTYLMFATVYLSVKSVQSEIKDGFKIGDLLTNKT
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
452 # FATLILSMLSTYVLCQTLKCIGSFANNTIGGTKGANDAPGGGSVASGKDGKAGVELPSDPDAQYKKELEVLAEARKEEESKTSDEDVKKFYYASVRSW
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
453 # IVMAWIFSNLSLITLVMKAGSVGIITKTKTSEEEAQRKNSDLYLYIILWSVAGLSAFRFVGSVWFLIHRKFAGI]