Mercurial > repos > iracooke > protk_proteogenomics

annotate test-data/small_combined.gff @ 1:a85c8de9630a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add tool-data
author iracooke
date Thu, 26 Mar 2015 20:16:00 -0400
parents 28067ed4ea0e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
1 ##gff-version 3
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
2 scaffold10 sixframe CDS 513537 514187 . + 0 ID=scaffold10_frame_3_orf_6477
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
3 scaffold10 sixframe CDS 346373 347986 . - 0 ID=scaffold10_frame_6_orf_3129
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
4 # start gene g447
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
5 scaffold10 AUGUSTUS gene 195564 196835 0.75 + . ID=g447
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
6 scaffold10 AUGUSTUS transcript 195564 196835 0.75 + . ID=g447.t1;Parent=g447
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
7 scaffold10 AUGUSTUS start_codon 195564 195566 . + 0 Parent=g447.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
8 scaffold10 AUGUSTUS intron 195714 195776 0.93 + . Parent=g447.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
9 scaffold10 AUGUSTUS CDS 195564 195713 0.82 + 0 ID=g447.t1.cds;Parent=g447.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
10 scaffold10 AUGUSTUS CDS 195777 196835 0.92 + 0 ID=g447.t1.cds;Parent=g447.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
11 scaffold10 AUGUSTUS stop_codon 196833 196835 . + 0 Parent=g447.t1
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
12 # coding sequence = [atggcggacaatagagattacgcgccagatactctggccgttcacgccgacgatgcgatgaactcatatacagatgtcg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
13 # cgcctgctttacacgtttctacaacctaccggtatgataattcaagactggtcccgatttcagatgaagagctagatcccctcaccgccctccctgta
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
14 # tactcccgcctctcggccccaaacatctcgcgcctcgaacttatactgagctccctgacgaacggacaggcactgacttattcgtctggtttaagtgc
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
15 # atttcatgccatgcttgtgtttttacgaccgaaagttatcgctatcagcgacggctaccacggatgtcatggtgttattgctatactggaaaaattat
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
16 # acggattgaagaaggtcaacctctgggatgagaaggaatgggatactttcggtttcggcgaaggcgatgtggtacacgtcgaaactcctctcaatcct
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
17 # accggcgaagccatcaatcttgaggttttcagggagaaagctaggaaaaggggcgcgtatctgacagttgattcgacgtttgggccgccggggttgca
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
18 # ggatccgttcgtgcaaggggcagatgtggttatgcattctgggaccaagtattttggaggacatagtgatatgctttgtggtgtcttggttgttcgga
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
19 # aagaaaagaaagaatggattagggggttgtggaatgagaggatgtatttagggagtgtaatggggaatatggagagttggcttggtgtgaggagtttg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
20 # aggacattggagttgagggtggcgaggcagagtaagaatgctgagagtattgtgaagtggcttgacgcttccttgcggggggagggggatgatgccgt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
21 # cgttgtacagaagacggttttgaagattcagcatgcgagtttgcagaaggatgatatggattggattaagacgcaaatgccgggtgggtttggaccgg
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
22 # tgtttgtgatatggatgaagtcgatgcagttagcaagggctcttcccgggaagctgaagctatttcatcatgctacgagtcttggaggcgtggaaagt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
23 # ctgattgaatggaggaaaatgagcgatagcggtgtagatgtcagagtgttgagagtcagcataggtgtagagcactgggaagacctgagggccgactt
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
24 # cttggaagggttcaaggctttggctctgtcggacgaagtaaatggagcataa]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
25 # protein sequence = [MADNRDYAPDTLAVHADDAMNSYTDVAPALHVSTTYRYDNSRLVPISDEELDPLTALPVYSRLSAPNISRLELILSSL
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
26 # TNGQALTYSSGLSAFHAMLVFLRPKVIAISDGYHGCHGVIAILEKLYGLKKVNLWDEKEWDTFGFGEGDVVHVETPLNPTGEAINLEVFREKARKRGA
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
27 # YLTVDSTFGPPGLQDPFVQGADVVMHSGTKYFGGHSDMLCGVLVVRKEKKEWIRGLWNERMYLGSVMGNMESWLGVRSLRTLELRVARQSKNAESIVK
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
28 # WLDASLRGEGDDAVVVQKTVLKIQHASLQKDDMDWIKTQMPGGFGPVFVIWMKSMQLARALPGKLKLFHHATSLGGVESLIEWRKMSDSGVDVRVLRV
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
29 # SIGVEHWEDLRADFLEGFKALALSDEVNGA]
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
30 # end gene g447
28067ed4ea0e Docker support and update for protk 1.4
iracooke
parents:
diff changeset
31 ###