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view test-data/small_combined.gff @ 2:68d8c9e521d7 draft

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planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
author iracooke
date Tue, 20 Oct 2015 20:34:50 -0400
parents 28067ed4ea0e
children
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##gff-version 3
scaffold10	sixframe	CDS	513537	514187	.	+	0	ID=scaffold10_frame_3_orf_6477
scaffold10	sixframe	CDS	346373	347986	.	-	0	ID=scaffold10_frame_6_orf_3129
# start gene g447
scaffold10	AUGUSTUS	gene	195564	196835	0.75	+	.	ID=g447
scaffold10	AUGUSTUS	transcript	195564	196835	0.75	+	.	ID=g447.t1;Parent=g447
scaffold10	AUGUSTUS	start_codon	195564	195566	.	+	0	Parent=g447.t1
scaffold10	AUGUSTUS	intron	195714	195776	0.93	+	.	Parent=g447.t1
scaffold10	AUGUSTUS	CDS	195564	195713	0.82	+	0	ID=g447.t1.cds;Parent=g447.t1
scaffold10	AUGUSTUS	CDS	195777	196835	0.92	+	0	ID=g447.t1.cds;Parent=g447.t1
scaffold10	AUGUSTUS	stop_codon	196833	196835	.	+	0	Parent=g447.t1
# coding sequence = [atggcggacaatagagattacgcgccagatactctggccgttcacgccgacgatgcgatgaactcatatacagatgtcg
# cgcctgctttacacgtttctacaacctaccggtatgataattcaagactggtcccgatttcagatgaagagctagatcccctcaccgccctccctgta
# tactcccgcctctcggccccaaacatctcgcgcctcgaacttatactgagctccctgacgaacggacaggcactgacttattcgtctggtttaagtgc
# atttcatgccatgcttgtgtttttacgaccgaaagttatcgctatcagcgacggctaccacggatgtcatggtgttattgctatactggaaaaattat
# acggattgaagaaggtcaacctctgggatgagaaggaatgggatactttcggtttcggcgaaggcgatgtggtacacgtcgaaactcctctcaatcct
# accggcgaagccatcaatcttgaggttttcagggagaaagctaggaaaaggggcgcgtatctgacagttgattcgacgtttgggccgccggggttgca
# ggatccgttcgtgcaaggggcagatgtggttatgcattctgggaccaagtattttggaggacatagtgatatgctttgtggtgtcttggttgttcgga
# aagaaaagaaagaatggattagggggttgtggaatgagaggatgtatttagggagtgtaatggggaatatggagagttggcttggtgtgaggagtttg
# aggacattggagttgagggtggcgaggcagagtaagaatgctgagagtattgtgaagtggcttgacgcttccttgcggggggagggggatgatgccgt
# cgttgtacagaagacggttttgaagattcagcatgcgagtttgcagaaggatgatatggattggattaagacgcaaatgccgggtgggtttggaccgg
# tgtttgtgatatggatgaagtcgatgcagttagcaagggctcttcccgggaagctgaagctatttcatcatgctacgagtcttggaggcgtggaaagt
# ctgattgaatggaggaaaatgagcgatagcggtgtagatgtcagagtgttgagagtcagcataggtgtagagcactgggaagacctgagggccgactt
# cttggaagggttcaaggctttggctctgtcggacgaagtaaatggagcataa]
# protein sequence = [MADNRDYAPDTLAVHADDAMNSYTDVAPALHVSTTYRYDNSRLVPISDEELDPLTALPVYSRLSAPNISRLELILSSL
# TNGQALTYSSGLSAFHAMLVFLRPKVIAISDGYHGCHGVIAILEKLYGLKKVNLWDEKEWDTFGFGEGDVVHVETPLNPTGEAINLEVFREKARKRGA
# YLTVDSTFGPPGLQDPFVQGADVVMHSGTKYFGGHSDMLCGVLVVRKEKKEWIRGLWNERMYLGSVMGNMESWLGVRSLRTLELRVARQSKNAESIVK
# WLDASLRGEGDDAVVVQKTVLKIQHASLQKDDMDWIKTQMPGGFGPVFVIWMKSMQLARALPGKLKLFHHATSLGGVESLIEWRKMSDSGVDVRVLRV
# SIGVEHWEDLRADFLEGFKALALSDEVNGA]
# end gene g447
###