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1 <tool id="pepxml_to_table_1" name="PepXML to Table" version="1.0.1">
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2
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3 <requirements>
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4 <requirement type="package" version="1.3">protk</requirement>
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5 </requirements>
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6
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7
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8
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9 <description>Converts a pepXML file to a tab delimited text file</description>
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10
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11
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12 <!-- Note .. the input file is assumed to be the first argument -->
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13 <command>pepxml_to_table.rb $input_file -o $output</command>
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14
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15
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16 <inputs>
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17
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18 <param name="input_file" type="data" format="pepxml,raw_pepxml,peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Input File" help="A pepXML file"/>
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19
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20 </inputs>
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21 <outputs>
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22 <data format="csv" name="output" metadata_source="input_file" label="${input_file.display_name}.csv" />
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23 </outputs>
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24
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25 <help>
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26 Convert a pepXML file to Tab delimited text
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27 </help>
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28
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29 </tool>
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