Mercurial > repos > iracooke > tpp_prophets
comparison interprophet.xml @ 16:1b86e378de37 draft
Fix tabular outputs. Export XML_ONLY variable
| author | iracooke |
|---|---|
| date | Mon, 26 Oct 2015 20:40:34 -0400 |
| parents | 0746a2ae9e04 |
| children |
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| 15:0746a2ae9e04 | 16:1b86e378de37 |
|---|---|
| 5 <requirement type="package" version="1.4.3">protk</requirement> | 5 <requirement type="package" version="1.4.3">protk</requirement> |
| 6 <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> | 6 <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> |
| 7 </requirements> | 7 </requirements> |
| 8 <command> | 8 <command> |
| 9 <![CDATA[ | 9 <![CDATA[ |
| 10 export XML_ONLY="true"; | |
| 11 | |
| 10 interprophet.rb --galaxy | 12 interprophet.rb --galaxy |
| 11 #if str( $input_type.type ) == "files": | 13 #if str( $input_type.type ) == "files": |
| 12 #for $pepxml_file in $input_type.pepxml_files: | 14 #for $pepxml_file in $input_type.pepxml_files: |
| 13 ${pepxml_file} | 15 ${pepxml_file} |
| 14 #end for | 16 #end for |