Mercurial > repos > iracooke > tpp_prophets
comparison peptide_prophet.xml @ 16:1b86e378de37 draft
Fix tabular outputs. Export XML_ONLY variable
author | iracooke |
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date | Mon, 26 Oct 2015 20:40:34 -0400 |
parents | 0746a2ae9e04 |
children | 868e75fc0f70 |
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15:0746a2ae9e04 | 16:1b86e378de37 |
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4 <container type="docker">iracooke/protk-1.4.3</container> | 4 <container type="docker">iracooke/protk-1.4.3</container> |
5 <requirement type="package" version="1.4.3">protk</requirement> | 5 <requirement type="package" version="1.4.3">protk</requirement> |
6 <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> | 6 <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> |
7 </requirements> | 7 </requirements> |
8 <command> | 8 <command> |
9 # This should be in the tpp_package. | |
10 # A hack for now | |
11 export XML_ONLY="true"; | |
12 | |
9 peptide_prophet.rb | 13 peptide_prophet.rb |
10 --galaxy $input_file | 14 --galaxy $input_file |
11 -o peptide_prophet_output.pep.xml | 15 -o peptide_prophet_output.pep.xml |
12 -r | 16 -r |
13 $glyco | 17 $glyco |