Mercurial > repos > iracooke > tpp_prophets

comparison interprophet_wrapper.rb @ 7:3f0cb90824f1

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Uploaded
author iracooke
date Tue, 05 Mar 2013 00:28:22 -0500
parents 25261529840c
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6:7005346b534d 7:3f0cb90824f1
32 cmd << "ln -s #{input} #{actual_input_path_string};" 32 cmd << "ln -s #{input} #{actual_input_path_string};"
33 output_substitution_cmds << "ruby -pi -e \"gsub('#{actual_input_path_string}', '#{input}.pep.xml')\" interprophet_output.pep.xml;" 33 output_substitution_cmds << "ruby -pi -e \"gsub('#{actual_input_path_string}', '#{input}.pep.xml')\" interprophet_output.pep.xml;"
34 actual_input_path_string 34 actual_input_path_string
35 end 35 end
36 36
37 cmd << "rvm 1.9.3@protk-1.1.9 do interprophet.rb" 37 cmd << "rvm 1.9.3@protk-1.2.0 do interprophet.rb"
38 38
39 cmd << " --no-nss" unless use_nss=="blank" 39 cmd << " --no-nss" unless use_nss=="blank"
40 cmd << " --no-nrs" unless use_nrs=="blank" 40 cmd << " --no-nrs" unless use_nrs=="blank"
41 cmd << " --no-nse" unless use_nse=="blank" 41 cmd << " --no-nse" unless use_nse=="blank"
42 cmd << " --no-nsi" unless use_nsi=="blank" 42 cmd << " --no-nsi" unless use_nsi=="blank"