Mercurial > repos > iracooke > tpp_prophets

comparison protein_prophet.xml @ 6:7005346b534d

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Uploaded
author iracooke
date Mon, 04 Mar 2013 19:20:05 -0500
parents 97f1c89cd831
children 3f0cb90824f1
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5:97f1c89cd831 6:7005346b534d
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7 <description>Calculate Protein Prophet statistics on search results</description> 7 <description>Calculate Protein Prophet statistics on search results</description>
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10 <!-- Note .. the input file is assumed to be the first argument --> 10 <!-- Note .. the input file is assumed to be the first argument -->
11 <command>protein_prophet_wrapper.rb --galaxy $input_file -r $iproph $nooccam $groupwts $normprotlen $logprobs $confem $allpeps $unmapped $instances $delude --minprob=$minprob --minindep=$minindep </command> 11 <command interpreter="ruby">protein_prophet_wrapper.rb --galaxy $input_file -r $iproph $nooccam $groupwts $normprotlen $logprobs $confem $allpeps $unmapped $instances $delude --minprob=$minprob --minindep=$minindep </command>
12 <inputs> 12 <inputs>
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14 <param name="input_file" type="data" format="peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Peptide Prophet Results" help="These files will typically be outputs from peptide prophet or interprophet"/> 14 <param name="input_file" type="data" format="peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Peptide Prophet Results" help="These files will typically be outputs from peptide prophet or interprophet"/>
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