Mercurial > repos > iracooke > tpp_prophets

comparison peptide_prophet_wrapper.rb @ 4:a67a5d30bb80

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author iracooke
date Mon, 04 Mar 2013 19:04:16 -0500
parents 25261529840c
children 3f0cb90824f1
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3:4c2e97f928d7 4:a67a5d30bb80
31 31
32 # Finally we need to fix up the output file so any references to the temporary working file are changed to refs to the original input file 32 # Finally we need to fix up the output file so any references to the temporary working file are changed to refs to the original input file
33 cmd << ";ruby -pi -e \"gsub('#{actual_input_path_string}', '#{original_input_file}')\" peptide_prophet_output.pep.xml" 33 cmd << ";ruby -pi -e \"gsub('#{actual_input_path_string}', '#{original_input_file}')\" peptide_prophet_output.pep.xml"
34 cmd << ";ruby -pi -e \"gsub('#{full_tmp_output_path_string}', '#{actual_output_path_string}')\" peptide_prophet_output.pep.xml" 34 cmd << ";ruby -pi -e \"gsub('#{full_tmp_output_path_string}', '#{actual_output_path_string}')\" peptide_prophet_output.pep.xml"
35 35
36 %x[#{cmd}] 36 p %x[#{cmd}]