Mercurial > repos > iracooke > tpp_prophets

comparison peptide_prophet.xml @ 13:b793fe628648 draft

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Uploaded
author iracooke
date Tue, 01 Jul 2014 11:16:41 -0400
parents 4c66453a168e
children d90c8bc10a9c
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12:4c66453a168e 13:b793fe628648
29 <inputs> 29 <inputs>
30 30
31 <param name="input_file" type="data" format="raw_pepxml" multiple="false" label="Raw Search Results" help="These files will typically be outputs from omssa or xtandem search tools"/> 31 <param name="input_file" type="data" format="raw_pepxml" multiple="false" label="Raw Search Results" help="These files will typically be outputs from omssa or xtandem search tools"/>
32 32
33 <param name="glyco" type="boolean" label="Expect true positives to have a glycocapture motif" truevalue="--glyco" falsevalue=""/> 33 <param name="glyco" type="boolean" label="Expect true positives to have a glycocapture motif" truevalue="--glyco" falsevalue=""/>
34 <param name="useicat" type="boolean" label="Use icat information" truevalue="--useicat" falsevalue="--no-useicat"/> 34 <param name="useicat" type="boolean" label="Use icat information" truevalue="--useicat" falsevalue=""/>
35 <param name="phospho" type="boolean" label="Use phospho information" truevalue="--phospho" falsevalue=""/> 35 <param name="phospho" type="boolean" label="Use phospho information" truevalue="--phospho" falsevalue=""/>
36 <param name="usepi" type="boolean" label="Use pI information" truevalue="--usepi" falsevalue=""/> 36 <param name="usepi" type="boolean" label="Use pI information" truevalue="--usepi" falsevalue=""/>
37 <param name="usert" type="boolean" label="Use hydrophobicity / RT information" truevalue="--usert" falsevalue=""/> 37 <param name="usert" type="boolean" label="Use hydrophobicity / RT information" truevalue="--usert" falsevalue=""/>
38 <param name="accurate_mass" type="boolean" label="Use accurate mass binning" truevalue="--accurate-mass" falsevalue=""/> 38 <param name="accurate_mass" type="boolean" label="Use accurate mass binning" truevalue="--accurate-mass" falsevalue=""/>
39 <param name="no_ntt" type="boolean" label="Don't use NTT model" truevalue="--no-ntt" falsevalue=""/> 39 <param name="no_ntt" type="boolean" label="Don't use NTT model" truevalue="--no-ntt" falsevalue=""/>