Mercurial > repos > iracooke > tpp_prophets
diff protein_prophet.xml @ 14:d90c8bc10a9c draft
Docker support and update for protk 1.4
author | iracooke |
---|---|
date | Thu, 26 Mar 2015 19:55:19 -0400 |
parents | 4c66453a168e |
children | 0746a2ae9e04 |
line wrap: on
line diff
--- a/protein_prophet.xml Tue Jul 01 11:16:41 2014 -0400 +++ b/protein_prophet.xml Thu Mar 26 19:55:19 2015 -0400 @@ -1,7 +1,8 @@ -<tool id="proteomics_search_protein_prophet_1" name="Protein Prophet" version="1.0.1"> +<tool id="proteomics_search_protein_prophet_1" name="Protein Prophet" version="1.1.0"> <requirements> - <requirement type="package" version="1.3">protk</requirement> - <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement> + <container type="docker">iracooke/protk-1.4.1</container> + <requirement type="package" version="1.4">protk</requirement> + <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> </requirements> <description>Calculate Protein Prophet statistics on search results</description> @@ -35,7 +36,6 @@ <param name="input_file" type="data" format="peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Peptide Prophet Results" help="These files will typically be outputs from peptide prophet or interprophet"/> - <param name="iproph" selected="true" type="boolean" label="Inputs are from iProphet" truevalue="--iprophet-input" falsevalue=""/> <param name="nooccam" type="boolean" label="Don't apply Occam's razor" help="When selected no attempt will be made to derive the simplest protein list explaining observed peptides" truevalue="--no-occam" falsevalue=""/> <param name="groupwts" type="boolean" label="Use group weights" help="Check peptide's total weight (rather than actual weight) in the Protein Group against the threshold" truevalue="--group-wts" falsevalue=""/>