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view pepxml_to_table.xml @ 13:b793fe628648 draft

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author iracooke
date Tue, 01 Jul 2014 11:16:41 -0400
parents 4c66453a168e
children d90c8bc10a9c
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<tool id="pepxml_to_table_1" name="PepXML to Table" version="1.0.1">

	<requirements>
	    <requirement type="package" version="1.3">protk</requirement>
   </requirements>



  <description>Converts a pepXML file to a tab delimited text file</description>


<!-- Note .. the input file is assumed to be the first argument -->
<command>pepxml_to_table.rb $input_file -o $output</command>


<inputs>

	<param name="input_file" type="data" format="pepxml,raw_pepxml,peptideprophet_pepxml,interprophet_pepxml"  multiple="false" label="Input File" help="A pepXML file"/>

</inputs>
<outputs>
	<data format="csv" name="output" metadata_source="input_file" label="${input_file.display_name}.csv" />
</outputs>

<help>
	Convert a pepXML file to Tab delimited text
</help>

</tool>