Mercurial > repos > iracooke > tpp_prophets
view protxml_to_table.xml @ 14:d90c8bc10a9c draft
Docker support and update for protk 1.4
author | iracooke |
---|---|
date | Thu, 26 Mar 2015 19:55:19 -0400 |
parents | 4c66453a168e |
children | 0746a2ae9e04 |
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<tool id="protxml_to_table_1" name="ProtXML to Table" version="1.1.0"> <requirements> <container type="docker">iracooke/protk-1.4.1</container> <requirement type="package" version="1.4">protk</requirement> </requirements> <description>Converts a ProtXML file to a table</description> <command> protxml_to_table.rb $invert_probs $input_file -o $output </command> <inputs> <param format="protxml" name="input_file" type="data" label="ProtXML File to Convert"/> <param name="invert_probs" type="boolean" label="Print inverted probabilities (ie 1-p instead of p)" truevalue="--invert-probabilities" falsevalue=""/> </inputs> <outputs> <data format="tabular" name="output" /> </outputs> <tests> <!-- Just test that the tool runs and produces vaguely correct output --> <test> <param name="input_file" value="mr176-BSA100fmole_BA3_01_8168.d_tandem_pproph_protproph.prot.xml" format="protxml"/> <output name="output" format="tabular"> <assert_contents> <has_text text="AVQKYLTAHEQSK" /> </assert_contents> </output> </test> </tests> <help> **What it does** Converts a ProtXML file to a tab separated table </help> </tool>