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comparison test-data/tandem_to_pepxml_test.tandem @ 14:9d6e0ad4d600 draft

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Docker support and update for protk 1.4
author iracooke
date Thu, 26 Mar 2015 19:53:53 -0400
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13:c60d1f18fd85 14:9d6e0ad4d600
1 <?xml version="1.0"?>
2 <?xml-stylesheet type="text/xsl" href="tandem-style.xsl"?>
3 <bioml xmlns:GAML="http://www.bioml.com/gaml/" label="models from '/Users/icooke/Desktop/iptest/mr176-BSA100fmole_BA3_01_8167.d.mgf'">
4 <group id="1" mh="1443.700944" z="2" rt="" expect="5.9e-02" label="tr|O16132|O16132_HYDVU NK-2 class homeobox transcription factor OS=Hydra vulgaris..." type="model" sumI="3.89" maxI="899" fI="8.99" act="0" >
5 <protein expect="-1.2" id="1.1" uid="14" label="tr|O16132|O16132_HYDVU NK-2 class homeobox transcription factor OS=Hydra vulgaris..." sumI="4.77" >
6 <note label="description">tr|O16132|O16132_HYDVU NK-2 class homeobox transcription factor OS=Hydra vulgaris GN=CnNK-2 PE=2 SV=1</note>
7 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
8 <peptide start="1" end="328">
9
10 <domain id="1.1.1" start="257" end="269" expect="5.9e-02" mh="1379.728" delta="63.973" hyperscore="24.9" nextscore="22.2" y_score="13.5" y_ions="6" b_score="0.0" b_ions="0" pre="FQHR" post="DVCL" seq="NVPVLVQNNQVSS" missed_cleavages="0">
11 </domain>
12 </peptide>
13 </protein>
14 </group>
15 <group id="2" mh="1249.669838" z="3" rt="" expect="1.9e+00" label="sp|P28468|HOX1_HALRO Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2..." type="model" sumI="3.67" maxI="388" fI="3.88" act="0" >
16 <protein expect="0.0" id="2.1" uid="19" label="sp|P28468|HOX1_HALRO Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2..." sumI="5.26" >
17 <note label="description">sp|P28468|HOX1_HALRO Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2 SV=1</note>
18 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
19 <peptide start="1" end="741">
20
21 <domain id="2.1.1" start="87" end="96" expect="1.9e+00" mh="1210.479" delta="39.191" hyperscore="21.6" nextscore="20.0" y_score="8.8" y_ions="4" b_score="9.8" b_ions="5" pre="NHAQ" post="SKKD" seq="EQSSEENFCR" missed_cleavages="0">
22 </domain>
23 </peptide>
24 </protein>
25 </group>
26 <group id="3" mh="1399.715504" z="2" rt="" expect="9.9e-02" label="tr|Q90853|Q90853_CHICK Homeobox protein OS=Gallus gallus GN=GH6 PE=2 SV=1" type="model" sumI="3.56" maxI="786" fI="7.86" act="0" >
27 <protein expect="-1.0" id="3.1" uid="16" label="tr|Q90853|Q90853_CHICK Homeobox protein OS=Gallus gallus GN=GH6 PE=2 SV=1" sumI="4.91" >
28 <note label="description">tr|Q90853|Q90853_CHICK Homeobox protein OS=Gallus gallus GN=GH6 PE=2 SV=1</note>
29 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
30 <peptide start="1" end="368">
31
32 <domain id="3.1.1" start="208" end="219" expect="9.9e-02" mh="1381.663" delta="18.052" hyperscore="23.9" nextscore="19.3" y_score="7.6" y_ions="5" b_score="9.6" b_ions="4" pre="VFSR" post="KRYL" seq="SQVFQLESTFDV" missed_cleavages="0">
33 </domain>
34 </peptide>
35 </protein>
36 </group>
37 <group id="4" mh="1452.636818" z="3" rt="" expect="2.2e+00" label="sp|P28468|HOX1_HALRO Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2..." type="model" sumI="3.39" maxI="389" fI="3.89" act="0" >
38 <protein expect="0.0" id="4.1" uid="19" label="sp|P28468|HOX1_HALRO Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2..." sumI="5.26" >
39 <note label="description">sp|P28468|HOX1_HALRO Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2 SV=1</note>
40 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
41 <peptide start="1" end="741">
42
43 <domain id="4.1.1" start="589" end="600" expect="2.2e+00" mh="1413.614" delta="39.022" hyperscore="20.2" nextscore="19.4" y_score="10.9" y_ions="4" b_score="9.6" b_ions="3" pre="NNFK" post="FNEL" seq="SMLPGNFENPYF" missed_cleavages="0">
44 <aa type="M" at="590" modified="15.99492" />
45 </domain>
46 </peptide>
47 </protein>
48 </group>
49 <group id="5" mh="1399.717238" z="3" rt="" expect="1.1e+00" label="sp|O93590|ZAX_XENLA Homeobox protein zampogna OS=Xenopus laevis GN=zax PE=2 SV=1" type="model" sumI="4.15" maxI="2944" fI="29.44" act="0" >
50 <protein expect="0.0" id="5.1" uid="15" label="sp|O93590|ZAX_XENLA Homeobox protein zampogna OS=Xenopus laevis GN=zax PE=2 SV=1" sumI="4.49" >
51 <note label="description">sp|O93590|ZAX_XENLA Homeobox protein zampogna OS=Xenopus laevis GN=zax PE=2 SV=1</note>
52 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
53 <peptide start="1" end="224">
54
55 <domain id="5.1.1" start="60" end="71" expect="1.1e+00" mh="1392.534" delta="7.183" hyperscore="22.3" nextscore="21.8" y_score="12.8" y_ions="5" b_score="5.3" b_ions="2" pre="EKEK" post="ERDT" seq="TDTDSGTEDFHW" missed_cleavages="0">
56 </domain>
57 </peptide>
58 </protein>
59 </group>
60 <group id="6" mh="575.347440" z="1" rt="" expect="5.1e+00" label="sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2..." type="model" sumI="3.53" maxI="832" fI="8.32" act="0" >
61 <protein expect="0.0" id="6.1" uid="20" label="sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2..." sumI="4.58" >
62 <note label="description">sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2 SV=1</note>
63 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
64 <peptide start="1" end="384">
65
66 <domain id="6.1.1" start="220" end="224" expect="5.1e+00" mh="492.245" delta="83.102" hyperscore="13.8" nextscore="13.5" y_score="9.7" y_ions="2" b_score="10.5" b_ions="2" pre="TSSR" post="RAKK" seq="ESPPV" missed_cleavages="0">
67 <aa type="E" at="220" modified="-18.01056" />
68 </domain>
69 </peptide>
70 </protein>
71 </group>
72 <group id="7" mh="922.521724" z="2" rt="" expect="2.6e+00" label="sp|P28468|HOX1_HALRO Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2..." type="model" sumI="4.04" maxI="1543" fI="15.43" act="0" >
73 <protein expect="0.0" id="7.1" uid="19" label="sp|P28468|HOX1_HALRO Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2..." sumI="5.26" >
74 <note label="description">sp|P28468|HOX1_HALRO Homeobox protein AHox1 OS=Halocynthia roretzi GN=AHOX1 PE=2 SV=1</note>
75 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
76 <peptide start="1" end="741">
77
78 <domain id="7.1.1" start="462" end="470" expect="2.6e+00" mh="896.484" delta="26.038" hyperscore="18.7" nextscore="18.6" y_score="7.2" y_ions="3" b_score="12.4" b_ions="3" pre="TGER" post="NSGM" seq="NDSLAGPLK" missed_cleavages="0">
79 </domain>
80 </peptide>
81 </protein>
82 </group>
83 <group id="8" mh="1324.654624" z="2" rt="" expect="2.1e+00" label="tr|O16132|O16132_HYDVU NK-2 class homeobox transcription factor OS=Hydra vulgaris..." type="model" sumI="3.67" maxI="453" fI="4.53" act="0" >
84 <protein expect="-1.2" id="8.1" uid="14" label="tr|O16132|O16132_HYDVU NK-2 class homeobox transcription factor OS=Hydra vulgaris..." sumI="4.77" >
85 <note label="description">tr|O16132|O16132_HYDVU NK-2 class homeobox transcription factor OS=Hydra vulgaris GN=CnNK-2 PE=2 SV=1</note>
86 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
87 <peptide start="1" end="328">
88
89 <domain id="8.1.1" start="1" end="12" expect="2.1e+00" mh="1354.635" delta="-29.980" hyperscore="20.3" nextscore="18.7" y_score="8.9" y_ions="3" b_score="11.3" b_ions="4" pre="[" post="LVDD" seq="MDFSILPVNSSF" missed_cleavages="0">
90 <aa type="M" at="1" modified="15.99492" />
91 </domain>
92 </peptide>
93 </protein>
94 </group>
95 <group id="9" mh="1502.678164" z="2" rt="" expect="4.4e-01" label="sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanogaster GN=slou PE=2..." type="model" sumI="3.98" maxI="999" fI="9.99" act="0" >
96 <protein expect="0.0" id="9.1" uid="24" label="sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanogaster GN=slou PE=2..." sumI="4.22" >
97 <note label="description">sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanogaster GN=slou PE=2 SV=1</note>
98 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
99 <peptide start="1" end="659">
100
101 <domain id="9.1.1" start="564" end="575" expect="4.4e-01" mh="1484.768" delta="17.910" hyperscore="21.8" nextscore="19.1" y_score="8.4" y_ions="4" b_score="10.3" b_ions="4" pre="LENK" post="LNLA" seq="FKTTRYLSVCER" missed_cleavages="2">
102 </domain>
103 </peptide>
104 </protein>
105 </group>
106 <group id="10" mh="1107.559904" z="2" rt="" expect="2.5e+00" label="tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6..." type="model" sumI="4.02" maxI="1779" fI="17.79" act="0" >
107 <protein expect="0.0" id="10.1" uid="12" label="tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6..." sumI="4.79" >
108 <note label="description">tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6 PE=2 SV=1</note>
109 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
110 <peptide start="1" end="260">
111
112 <domain id="10.1.1" start="242" end="251" expect="2.5e+00" mh="1019.542" delta="88.018" hyperscore="20.0" nextscore="19.1" y_score="11.7" y_ions="5" b_score="0.0" b_ions="0" pre="VPDA" post="GAGK" seq="WSPPLPAGGR" missed_cleavages="0">
113 </domain>
114 </peptide>
115 </protein>
116 </group>
117 <group id="11" mh="1161.485744" z="2" rt="" expect="2.3e+00" label="sp|Q04787|BSH_DROME Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh..." type="model" sumI="3.48" maxI="151" fI="1.51" act="0" >
118 <protein expect="0.0" id="11.1" uid="25" label="sp|Q04787|BSH_DROME Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh..." sumI="4.61" >
119 <note label="description">sp|Q04787|BSH_DROME Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh PE=2 SV=5</note>
120 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
121 <peptide start="1" end="429">
122
123 <domain id="11.1.1" start="354" end="365" expect="2.3e+00" mh="1104.480" delta="57.005" hyperscore="22.1" nextscore="20.9" y_score="10.3" y_ions="6" b_score="7.7" b_ions="1" pre="PGKQ" post="HGKL" seq="PGEATSSSGDSK" missed_cleavages="0">
124 </domain>
125 </peptide>
126 </protein>
127 </group>
128 <group id="12" mh="1749.738158" z="3" rt="" expect="2.5e+00" label="sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2..." type="model" sumI="3.90" maxI="1053" fI="10.53" act="0" >
129 <protein expect="0.0" id="12.1" uid="10" label="sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2..." sumI="4.73" >
130 <note label="description">sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2 SV=1</note>
131 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
132 <peptide start="1" end="318">
133
134 <domain id="12.1.1" start="1" end="16" expect="2.5e+00" mh="1756.873" delta="-7.135" hyperscore="21.7" nextscore="21.0" y_score="6.3" y_ions="3" b_score="8.6" b_ions="7" pre="[" post="ILNL" seq="MFPSPALTHTPFSVKD" missed_cleavages="1">
135 </domain>
136 </peptide>
137 </protein>
138 </group>
139 <group id="13" mh="1747.773984" z="2" rt="" expect="1.1e+00" label="sp|P26797|HM19_CAEEL Homeobox protein ceh-19 OS=Caenorhabditis elegans GN=ceh-19..." type="model" sumI="3.73" maxI="496" fI="4.96" act="0" >
140 <protein expect="0.0" id="13.1" uid="23" label="sp|P26797|HM19_CAEEL Homeobox protein ceh-19 OS=Caenorhabditis elegans GN=ceh-19..." sumI="4.27" >
141 <note label="description">sp|P26797|HM19_CAEEL Homeobox protein ceh-19 OS=Caenorhabditis elegans GN=ceh-19 PE=2 SV=2</note>
142 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
143 <peptide start="1" end="199">
144
145 <domain id="13.1.1" start="118" end="132" expect="1.1e+00" mh="1758.986" delta="-11.212" hyperscore="19.3" nextscore="16.6" y_score="8.9" y_ions="4" b_score="9.9" b_ions="3" pre="QTDK" post="LTET" seq="YLSVNKRIQLSQTLN" missed_cleavages="2">
146 </domain>
147 </peptide>
148 </protein>
149 </group>
150 <group id="14" mh="1800.698978" z="3" rt="" expect="2.2e+00" label="sp|O93367|TLX3_CHICK T-cell leukemia homeobox protein 3 OS=Gallus gallus GN=TLX3..." type="model" sumI="3.45" maxI="155" fI="1.55" act="0" >
151 <protein expect="0.0" id="14.1" uid="7" label="sp|O93367|TLX3_CHICK T-cell leukemia homeobox protein 3 OS=Gallus gallus GN=TLX3..." sumI="3.45" >
152 <note label="description">sp|O93367|TLX3_CHICK T-cell leukemia homeobox protein 3 OS=Gallus gallus GN=TLX3 PE=2 SV=1</note>
153 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
154 <peptide start="1" end="297">
155
156 <domain id="14.1.1" start="123" end="138" expect="2.2e+00" mh="1701.842" delta="98.857" hyperscore="22.0" nextscore="21.8" y_score="9.3" y_ions="4" b_score="10.1" b_ions="4" pre="AIPA" post="RFVK" seq="VPGLGGLSFPWMESSR" missed_cleavages="0">
157 </domain>
158 </peptide>
159 </protein>
160 </group>
161 <group id="15" mh="1262.649164" z="2" rt="" expect="1.8e+00" label="tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6..." type="model" sumI="3.57" maxI="1109" fI="11.09" act="0" >
162 <protein expect="0.0" id="15.1" uid="12" label="tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6..." sumI="4.79" >
163 <note label="description">tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6 PE=2 SV=1</note>
164 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
165 <peptide start="1" end="260">
166
167 <domain id="15.1.1" start="175" end="186" expect="1.8e+00" mh="1184.646" delta="78.004" hyperscore="18.4" nextscore="17.2" y_score="10.1" y_ions="5" b_score="0.0" b_ions="0" pre="VATR" post="PAPA" seq="ALPTTLAMRAAA" missed_cleavages="1">
168 <aa type="M" at="182" modified="15.99492" />
169 </domain>
170 </peptide>
171 </protein>
172 </group>
173 <group id="16" mh="1901.975798" z="3" rt="" expect="1.7e+00" label="sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2..." type="model" sumI="3.47" maxI="208" fI="2.08" act="0" >
174 <protein expect="0.0" id="16.1" uid="21" label="sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2..." sumI="5.01" >
175 <note label="description">sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2 SV=2</note>
176 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
177 <peptide start="1" end="544">
178
179 <domain id="16.1.1" start="358" end="376" expect="1.7e+00" mh="1960.029" delta="-58.053" hyperscore="22.4" nextscore="22.0" y_score="10.0" y_ions="6" b_score="9.5" b_ions="4" pre="WKRQ" post="LYGG" seq="TAVGLELLAEAGNFAAFQR" missed_cleavages="0">
180 </domain>
181 </peptide>
182 </protein>
183 </group>
184 <group id="17" mh="1123.554904" z="2" rt="" expect="2.2e+00" label="sp|P22711|TIN_DROME Muscle-specific homeobox protein tinman OS=Drosophila melanogaster..." type="model" sumI="3.88" maxI="678" fI="6.78" act="0" >
185 <protein expect="0.0" id="17.1" uid="13" label="sp|P22711|TIN_DROME Muscle-specific homeobox protein tinman OS=Drosophila melanogaster..." sumI="3.88" >
186 <note label="description">sp|P22711|TIN_DROME Muscle-specific homeobox protein tinman OS=Drosophila melanogaster GN=tin PE=2 SV=2</note>
187 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
188 <peptide start="1" end="416">
189
190 <domain id="17.1.1" start="374" end="384" expect="2.2e+00" mh="1124.547" delta="-0.992" hyperscore="19.2" nextscore="19.1" y_score="9.8" y_ions="3" b_score="12.7" b_ions="3" pre="LKLK" post="PPIP" seq="SEPLDSPTSLP" missed_cleavages="0">
191 </domain>
192 </peptide>
193 </protein>
194 </group>
195 <group id="18" mh="1107.557704" z="2" rt="" expect="4.7e-01" label="sp|Q04787|BSH_DROME Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh..." type="model" sumI="3.69" maxI="722" fI="7.22" act="0" >
196 <protein expect="0.0" id="18.1" uid="25" label="sp|Q04787|BSH_DROME Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh..." sumI="4.61" >
197 <note label="description">sp|Q04787|BSH_DROME Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh PE=2 SV=5</note>
198 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
199 <peptide start="1" end="429">
200
201 <domain id="18.1.1" start="231" end="240" expect="4.7e-01" mh="1108.531" delta="-0.973" hyperscore="21.7" nextscore="19.2" y_score="7.4" y_ions="5" b_score="13.4" b_ions="1" pre="GTYK" post="SLFG" seq="SVDPYFLSQA" missed_cleavages="0">
202 </domain>
203 </peptide>
204 </protein>
205 </group>
206 <group id="19" mh="1174.443864" z="2" rt="" expect="5.3e-01" label="sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2..." type="model" sumI="3.61" maxI="253" fI="2.53" act="0" >
207 <protein expect="0.0" id="19.1" uid="21" label="sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2..." sumI="5.01" >
208 <note label="description">sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2 SV=2</note>
209 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
210 <peptide start="1" end="544">
211
212 <domain id="19.1.1" start="75" end="83" expect="5.3e-01" mh="1106.566" delta="67.878" hyperscore="21.6" nextscore="19.2" y_score="10.1" y_ions="6" b_score="0.0" b_ions="0" pre="KPNR" post="AGSA" seq="SRFMINDIL" missed_cleavages="1">
213 <aa type="M" at="78" modified="15.99492" />
214 </domain>
215 </peptide>
216 </protein>
217 </group>
218 <group id="20" mh="1554.715024" z="2" rt="" expect="2.0e+00" label="tr|O16132|O16132_HYDVU NK-2 class homeobox transcription factor OS=Hydra vulgaris..." type="model" sumI="3.80" maxI="1631" fI="16.31" act="0" >
219 <protein expect="-1.2" id="20.1" uid="14" label="tr|O16132|O16132_HYDVU NK-2 class homeobox transcription factor OS=Hydra vulgaris..." sumI="4.77" >
220 <note label="description">tr|O16132|O16132_HYDVU NK-2 class homeobox transcription factor OS=Hydra vulgaris GN=CnNK-2 PE=2 SV=1</note>
221 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
222 <peptide start="1" end="328">
223
224 <domain id="20.1.1" start="9" end="21" expect="2.0e+00" mh="1544.854" delta="9.861" hyperscore="18.1" nextscore="17.6" y_score="6.7" y_ions="6" b_score="0.0" b_ions="0" pre="ILPV" post="HYEN" seq="NSSFLVDDILRRK" missed_cleavages="2">
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232 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
233 <peptide start="1" end="237">
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241 <protein expect="0.0" id="22.1" uid="15" label="sp|O93590|ZAX_XENLA Homeobox protein zampogna OS=Xenopus laevis GN=zax PE=2 SV=1" sumI="4.49" >
242 <note label="description">sp|O93590|ZAX_XENLA Homeobox protein zampogna OS=Xenopus laevis GN=zax PE=2 SV=1</note>
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244 <peptide start="1" end="224">
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252 <protein expect="0.0" id="23.1" uid="9" label="tr|Q24786|Q24786_9METZ Homeobox-containing protein (Fragment) OS=Ephydatia fluviatilis..." sumI="4.06" >
253 <note label="description">tr|Q24786|Q24786_9METZ Homeobox-containing protein (Fragment) OS=Ephydatia fluviatilis GN=prox1 PE=3 SV=1</note>
254 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
255 <peptide start="1" end="118">
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257 <domain id="23.1.1" start="50" end="56" expect="1.9e+00" mh="893.499" delta="34.027" hyperscore="17.2" nextscore="16.7" y_score="8.9" y_ions="5" b_score="0.0" b_ions="0" pre="ELER" post="LTAH" seq="RFAVQKY" missed_cleavages="2">
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263 <protein expect="0.0" id="24.1" uid="11" label="tr|Q9YH59|Q9YH59_CHICK Homeodomain protein NKx2.1 OS=Gallus gallus GN=NKx2.1 PE=2..." sumI="5.14" >
264 <note label="description">tr|Q9YH59|Q9YH59_CHICK Homeodomain protein NKx2.1 OS=Gallus gallus GN=NKx2.1 PE=2 SV=1</note>
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268 <domain id="24.1.1" start="130" end="149" expect="1.7e+00" mh="1869.814" delta="-90.928" hyperscore="22.3" nextscore="22.3" y_score="8.2" y_ions="5" b_score="9.3" b_ions="6" pre="FMAP" post="SMAP" seq="SSGMNMGGMGGLSSLGDVSK" missed_cleavages="0">
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275 <protein expect="0.0" id="25.1" uid="21" label="sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2..." sumI="5.01" >
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277 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
278 <peptide start="1" end="544">
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280 <domain id="25.1.1" start="519" end="528" expect="3.6e+00" mh="977.516" delta="-49.987" hyperscore="17.8" nextscore="16.8" y_score="0.0" y_ions="0" b_score="12.2" b_ions="4" pre="TPSP" post="SVDS" seq="TLNPGSPPGR" missed_cleavages="0">
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286 <protein expect="0.0" id="26.1" uid="12" label="tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6..." sumI="4.79" >
287 <note label="description">tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6 PE=2 SV=1</note>
288 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
289 <peptide start="1" end="260">
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291 <domain id="26.1.1" start="17" end="29" expect="2.8e+00" mh="1318.723" delta="-27.968" hyperscore="20.5" nextscore="20.1" y_score="9.1" y_ions="6" b_score="0.0" b_ions="0" pre="RILW" post="LGAR" seq="GSHVKTPPGTISR" missed_cleavages="2">
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298 <group id="27" mh="1358.694068" z="3" rt="" expect="2.7e-01" label="tr|O70238|O70238_MOUSE Homeobox protein PSX OS=Mus musculus GN=Rhox6 PE=2 SV=2" type="model" sumI="3.85" maxI="1193" fI="11.93" act="0" >
299 <protein expect="0.0" id="27.1" uid="1" label="tr|O70238|O70238_MOUSE Homeobox protein PSX OS=Mus musculus GN=Rhox6 PE=2 SV=2" sumI="4.64" >
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301 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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304 <domain id="27.1.1" start="24" end="38" expect="2.7e-01" mh="1422.650" delta="-63.955" hyperscore="24.0" nextscore="20.4" y_score="12.2" y_ions="6" b_score="7.4" b_ions="4" pre="EEDK" post="ERID" seq="EEQPGGNAVVSGAPE" missed_cleavages="0">
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309 <group id="28" mh="1321.721884" z="2" rt="" expect="1.7e-01" label="sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanogaster GN=slou PE=2..." type="model" sumI="3.86" maxI="493" fI="4.93" act="0" >
310 <protein expect="0.0" id="28.1" uid="24" label="sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanogaster GN=slou PE=2..." sumI="4.22" >
311 <note label="description">sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanogaster GN=slou PE=2 SV=1</note>
312 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
313 <peptide start="1" end="659">
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315 <domain id="28.1.1" start="512" end="524" expect="1.7e-01" mh="1377.565" delta="-55.843" hyperscore="23.8" nextscore="21.8" y_score="12.4" y_ions="6" b_score="0.0" b_ions="0" pre="CDDG" post="KGGS" seq="SDIDDPSSETDSK" missed_cleavages="0">
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318 </domain>
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322 <group id="29" mh="1305.767164" z="2" rt="" expect="1.9e+00" label="sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2..." type="model" sumI="4.20" maxI="1632" fI="16.32" act="0" >
323 <protein expect="0.0" id="29.1" uid="10" label="sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2..." sumI="4.73" >
324 <note label="description">sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2 SV=1</note>
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328 <domain id="29.1.1" start="197" end="208" expect="1.9e+00" mh="1272.647" delta="33.120" hyperscore="22.2" nextscore="21.9" y_score="8.6" y_ions="5" b_score="10.3" b_ions="3" pre="KRQR" post="PPAR" seq="QDQTLELLGPPP" missed_cleavages="0">
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335 <protein expect="0.0" id="30.1" uid="12" label="tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6..." sumI="4.79" >
336 <note label="description">tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6 PE=2 SV=1</note>
337 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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340 <domain id="30.1.1" start="51" end="63" expect="2.3e+00" mh="1421.808" delta="18.058" hyperscore="20.9" nextscore="20.1" y_score="9.6" y_ions="5" b_score="6.4" b_ions="4" pre="DMRR" post="SRVL" seq="GGPVSTRTRPQRK" missed_cleavages="2">
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345 <group id="31" mh="651.367980" z="1" rt="" expect="7.4e+00" label="sp|Q04787|BSH_DROME Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh..." type="model" sumI="3.75" maxI="541" fI="5.41" act="0" >
346 <protein expect="0.0" id="31.1" uid="25" label="sp|Q04787|BSH_DROME Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh..." sumI="4.61" >
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348 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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351 <domain id="31.1.1" start="135" end="141" expect="7.4e+00" mh="721.315" delta="-69.947" hyperscore="13.7" nextscore="13.3" y_score="10.6" y_ions="3" b_score="4.0" b_ions="1" pre="ASGY" post="SMHS" seq="AGEDYGK" missed_cleavages="0">
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356 <group id="32" mh="1305.759364" z="2" rt="" expect="1.4e+00" label="sp|Q01702|DLX3B_DANRE Homeobox protein Dlx3b OS=Danio rerio GN=dlx3b PE=2 SV=1" type="model" sumI="3.78" maxI="666" fI="6.66" act="0" >
357 <protein expect="0.0" id="32.1" uid="28" label="sp|Q01702|DLX3B_DANRE Homeobox protein Dlx3b OS=Danio rerio GN=dlx3b PE=2 SV=1" sumI="4.01" >
358 <note label="description">sp|Q01702|DLX3B_DANRE Homeobox protein Dlx3b OS=Danio rerio GN=dlx3b PE=2 SV=1</note>
359 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
360 <peptide start="1" end="269">
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362 <domain id="32.1.1" start="10" end="22" expect="1.4e+00" mh="1262.593" delta="43.166" hyperscore="21.9" nextscore="19.6" y_score="9.8" y_ions="5" b_score="8.4" b_ions="3" pre="YDRK" post="CHPT" seq="IPGISTDLSGSMS" missed_cleavages="0">
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368 <group id="34" mh="1142.753764" z="2" rt="" expect="1.4e+00" label="sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2..." type="model" sumI="3.60" maxI="239" fI="2.39" act="0" >
369 <protein expect="0.0" id="34.1" uid="10" label="sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2..." sumI="4.73" >
370 <note label="description">sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2 SV=1</note>
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374 <domain id="34.1.1" start="26" end="36" expect="1.4e+00" mh="1055.584" delta="87.169" hyperscore="22.8" nextscore="22.8" y_score="9.8" y_ions="4" b_score="11.1" b_ions="4" pre="QQQR" post="EATL" seq="SLAAGDLSARL" missed_cleavages="1">
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379 <group id="33" mh="1305.770184" z="2" rt="" expect="2.0e+00" label="sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2..." type="model" sumI="3.73" maxI="540" fI="5.4" act="0" >
380 <protein expect="0.0" id="33.1" uid="10" label="sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2..." sumI="4.73" >
381 <note label="description">sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2 SV=1</note>
382 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
383 <peptide start="1" end="318">
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385 <domain id="33.1.1" start="36" end="47" expect="2.0e+00" mh="1217.590" delta="88.180" hyperscore="21.4" nextscore="21.2" y_score="9.6" y_ions="5" b_score="7.3" b_ions="3" pre="LSAR" post="AAFK" seq="LEATLAPASCML" missed_cleavages="0">
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392 <protein expect="-1.2" id="35.1" uid="14" label="tr|O16132|O16132_HYDVU NK-2 class homeobox transcription factor OS=Hydra vulgaris..." sumI="4.77" >
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394 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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397 <domain id="35.1.1" start="1" end="14" expect="1.8e+00" mh="1608.798" delta="-31.967" hyperscore="22.2" nextscore="22.1" y_score="9.9" y_ions="6" b_score="9.2" b_ions="4" pre="[" post="DDIL" seq="MDFSILPVNSSFLV" missed_cleavages="0">
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405 <protein expect="0.0" id="36.1" uid="4" label="sp|P52955|LBX1_MOUSE Transcription factor LBX1 OS=Mus musculus GN=Lbx1 PE=1 SV=2" sumI="3.94" >
406 <note label="description">sp|P52955|LBX1_MOUSE Transcription factor LBX1 OS=Mus musculus GN=Lbx1 PE=1 SV=2</note>
407 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
408 <peptide start="1" end="282">
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410 <domain id="36.1.1" start="231" end="246" expect="2.3e+00" mh="1481.786" delta="95.047" hyperscore="21.0" nextscore="20.3" y_score="9.6" y_ions="6" b_score="0.0" b_ions="0" pre="GRAK" post="GGGP" seq="SRPGSPALPPGAPQAP" missed_cleavages="0">
411 </domain>
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415 <group id="37" mh="1640.000544" z="2" rt="" expect="1.6e+00" label="tr|Q90853|Q90853_CHICK Homeobox protein OS=Gallus gallus GN=GH6 PE=2 SV=1" type="model" sumI="4.01" maxI="3555" fI="35.55" act="0" >
416 <protein expect="-1.0" id="37.1" uid="16" label="tr|Q90853|Q90853_CHICK Homeobox protein OS=Gallus gallus GN=GH6 PE=2 SV=1" sumI="4.91" >
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418 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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421 <domain id="37.1.1" start="318" end="333" expect="1.6e+00" mh="1594.844" delta="45.157" hyperscore="15.7" nextscore="15.6" y_score="6.6" y_ions="4" b_score="9.9" b_ions="1" pre="LPRR" post="HLCR" seq="LPSLPSLADDGTRLSA" missed_cleavages="1">
422 </domain>
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426 <group id="39" mh="1692.927188" z="3" rt="" expect="2.1e+00" label="sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2..." type="model" sumI="3.99" maxI="920" fI="9.2" act="0" >
427 <protein expect="0.0" id="39.1" uid="20" label="sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2..." sumI="4.58" >
428 <note label="description">sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2 SV=1</note>
429 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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432 <domain id="39.1.1" start="116" end="133" expect="2.1e+00" mh="1730.893" delta="-37.966" hyperscore="22.3" nextscore="22.0" y_score="6.8" y_ions="3" b_score="9.4" b_ions="7" pre="QQPP" post="TSTS" seq="PQPQSAAQQLGSAAAAPR" missed_cleavages="0">
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438 <protein expect="0.0" id="40.1" uid="11" label="tr|Q9YH59|Q9YH59_CHICK Homeodomain protein NKx2.1 OS=Gallus gallus GN=NKx2.1 PE=2..." sumI="5.14" >
439 <note label="description">tr|Q9YH59|Q9YH59_CHICK Homeodomain protein NKx2.1 OS=Gallus gallus GN=NKx2.1 PE=2 SV=1</note>
440 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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475 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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478 <domain id="43.1.1" start="78" end="92" expect="2.9e+00" mh="1363.537" delta="-79.779" hyperscore="17.5" nextscore="17.1" y_score="9.2" y_ions="5" b_score="0.0" b_ions="0" pre="TSPR" post="KKSR" seq="ASSPGGDRMGSPGSC" missed_cleavages="1">
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485 <protein expect="0.0" id="44.1" uid="21" label="sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2..." sumI="5.01" >
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487 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
488 <peptide start="1" end="544">
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490 <domain id="44.1.1" start="357" end="373" expect="2.9e-01" mh="1639.833" delta="-63.001" hyperscore="23.9" nextscore="20.4" y_score="7.7" y_ions="5" b_score="9.5" b_ions="7" pre="KWKR" post="FQRL" seq="QTAVGLELLAEAGNFAA" missed_cleavages="0">
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498 <note label="description">tr|Q9YH59|Q9YH59_CHICK Homeodomain protein NKx2.1 OS=Gallus gallus GN=NKx2.1 PE=2 SV=1</note>
499 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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502 <domain id="45.1.1" start="27" end="44" expect="1.5e+00" mh="1818.880" delta="62.112" hyperscore="24.6" nextscore="22.9" y_score="9.0" y_ions="3" b_score="8.7" b_ions="8" pre="SYKK" post="QVSQ" seq="VGMEGSNLGAPLSAYRQS" missed_cleavages="1">
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508 <protein expect="0.0" id="46.1" uid="21" label="sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2..." sumI="5.01" >
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510 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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513 <domain id="46.1.1" start="284" end="297" expect="2.4e+00" mh="1381.663" delta="86.129" hyperscore="21.2" nextscore="20.7" y_score="9.8" y_ions="6" b_score="0.0" b_ions="0" pre="DGNS" post="KQRK" seq="VKSGSTSDMSGLSK" missed_cleavages="2">
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520 <protein expect="0.0" id="47.1" uid="17" label="tr|O97671|O97671_RABIT Homeobox protein (Fragment) OS=Oryctolagus cuniculus GN=HEX..." sumI="4.09" >
521 <note label="description">tr|O97671|O97671_RABIT Homeobox protein (Fragment) OS=Oryctolagus cuniculus GN=HEX PE=2 SV=1</note>
522 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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525 <domain id="47.1.1" start="77" end="90" expect="1.8e+00" mh="1593.750" delta="-73.036" hyperscore="23.4" nextscore="23.2" y_score="10.6" y_ions="7" b_score="6.6" b_ions="3" pre="RRLK" post="DSSC" seq="QENPQSGKKEQENL" missed_cleavages="2">
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532 <protein expect="-1.0" id="48.1" uid="16" label="tr|Q90853|Q90853_CHICK Homeobox protein OS=Gallus gallus GN=GH6 PE=2 SV=1" sumI="4.91" >
533 <note label="description">tr|Q90853|Q90853_CHICK Homeobox protein OS=Gallus gallus GN=GH6 PE=2 SV=1</note>
534 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
535 <peptide start="1" end="368">
536
537 <domain id="48.1.1" start="75" end="88" expect="5.0e-01" mh="1485.819" delta="-66.072" hyperscore="25.9" nextscore="23.2" y_score="10.6" y_ions="7" b_score="7.5" b_ions="4" pre="ICPR" post="GGTR" seq="LVLFHRGPAGHRSG" missed_cleavages="2">
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543 <protein expect="0.0" id="49.1" uid="2" label="sp|P20269|HM05_CAEEL Homeobox protein ceh-5 OS=Caenorhabditis elegans GN=ceh-5 PE=2..." sumI="4.58" >
544 <note label="description">sp|P20269|HM05_CAEEL Homeobox protein ceh-5 OS=Caenorhabditis elegans GN=ceh-5 PE=2 SV=4</note>
545 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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548 <domain id="49.1.1" start="92" end="101" expect="1.3e+00" mh="1150.658" delta="13.018" hyperscore="21.0" nextscore="19.3" y_score="9.6" y_ions="6" b_score="0.0" b_ions="0" pre="TKQK" post="ETLK" seq="KIDSRDPIKP" missed_cleavages="2">
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554 <protein expect="0.0" id="50.1" uid="4" label="sp|P52955|LBX1_MOUSE Transcription factor LBX1 OS=Mus musculus GN=Lbx1 PE=1 SV=2" sumI="3.94" >
555 <note label="description">sp|P52955|LBX1_MOUSE Transcription factor LBX1 OS=Mus musculus GN=Lbx1 PE=1 SV=2</note>
556 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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559 <domain id="50.1.1" start="39" end="49" expect="2.0e+00" mh="1308.738" delta="-91.126" hyperscore="19.3" nextscore="18.5" y_score="10.0" y_ions="4" b_score="12.1" b_ions="2" pre="PFSI" post="SYSL" seq="EDILNKPSVRR" missed_cleavages="2">
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565 <protein expect="0.0" id="51.1" uid="8" label="sp|P56407|HM09_CAEEL Homeobox protein ceh-9 OS=Caenorhabditis elegans GN=ceh-9 PE=4..." sumI="3.70" >
566 <note label="description">sp|P56407|HM09_CAEEL Homeobox protein ceh-9 OS=Caenorhabditis elegans GN=ceh-9 PE=4 SV=2</note>
567 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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569
570 <domain id="51.1.1" start="106" end="115" expect="4.9e-01" mh="1170.648" delta="9.022" hyperscore="25.7" nextscore="22.7" y_score="10.9" y_ions="7" b_score="0.0" b_ions="0" pre="ELAK" post="IWFQ" seq="RLDVTETQVK" missed_cleavages="2">
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576 <protein expect="0.0" id="52.1" uid="12" label="tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6..." sumI="4.79" >
577 <note label="description">tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6 PE=2 SV=1</note>
578 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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580
581 <domain id="52.1.1" start="147" end="161" expect="1.1e+00" mh="1493.800" delta="-74.053" hyperscore="23.4" nextscore="21.4" y_score="9.6" y_ions="5" b_score="11.4" b_ions="3" pre="GTGR" post="KPPR" seq="QPLPGSDVAAFLVPT" missed_cleavages="0">
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587 <protein expect="0.0" id="53.1" uid="26" label="sp|O08686|BARX2_MOUSE Homeobox protein BarH-like 2 OS=Mus musculus GN=Barx2 PE=2..." sumI="4.26" >
588 <note label="description">sp|O08686|BARX2_MOUSE Homeobox protein BarH-like 2 OS=Mus musculus GN=Barx2 PE=2 SV=2</note>
589 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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600 <protein expect="0.0" id="54.1" uid="3" label="sp|P34663|HM23_CAEEL Homeobox protein ceh-23 OS=Caenorhabditis elegans GN=ceh-23..." sumI="4.61" >
601 <note label="description">sp|P34663|HM23_CAEEL Homeobox protein ceh-23 OS=Caenorhabditis elegans GN=ceh-23 PE=2 SV=1</note>
602 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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605 <domain id="54.1.1" start="271" end="282" expect="2.8e+00" mh="1414.633" delta="5.110" hyperscore="22.8" nextscore="22.6" y_score="9.3" y_ions="7" b_score="8.5" b_ions="2" pre="RRKQ" post="SEEI" seq="QEEQQSTTLEEK" missed_cleavages="0">
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612 <protein expect="0.0" id="55.1" uid="20" label="sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2..." sumI="4.58" >
613 <note label="description">sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2 SV=1</note>
614 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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617 <domain id="55.1.1" start="130" end="142" expect="1.8e+00" mh="1360.758" delta="58.986" hyperscore="19.4" nextscore="19.4" y_score="11.0" y_ions="5" b_score="5.6" b_ions="1" pre="GSAA" post="DILG" seq="AAPRTSTSSFLIK" missed_cleavages="1">
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625 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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635 <protein expect="0.0" id="57.1" uid="21" label="sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2..." sumI="5.01" >
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637 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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640 <domain id="57.1.1" start="284" end="297" expect="1.8e+00" mh="1381.663" delta="86.127" hyperscore="21.4" nextscore="20.8" y_score="9.9" y_ions="6" b_score="0.0" b_ions="0" pre="DGNS" post="KQRK" seq="VKSGSTSDMSGLSK" missed_cleavages="2">
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649 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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691 <domain id="61.1.1" start="126" end="139" expect="2.1e+00" mh="1508.818" delta="-93.076" hyperscore="21.3" nextscore="20.7" y_score="8.3" y_ions="5" b_score="8.9" b_ions="3" pre="SQAT" post="RYSE" seq="VTLQVPSTGSPERR" missed_cleavages="2">
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712
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723
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735
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744 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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746
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754 <note label="description">tr|Q23824|Q23824_HYDVD Msh protein (Fragment) OS=Hydra viridissima GN=msh PE=2 SV=1</note>
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757
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765 <note label="description">tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6 PE=2 SV=1</note>
766 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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768
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771 </peptide>
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775 <protein expect="0.0" id="70.1" uid="28" label="sp|Q01702|DLX3B_DANRE Homeobox protein Dlx3b OS=Danio rerio GN=dlx3b PE=2 SV=1" sumI="4.01" >
776 <note label="description">sp|Q01702|DLX3B_DANRE Homeobox protein Dlx3b OS=Danio rerio GN=dlx3b PE=2 SV=1</note>
777 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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779
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788 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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790
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793 </peptide>
794 </protein>
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797 <protein expect="0.0" id="72.1" uid="12" label="tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6..." sumI="4.79" >
798 <note label="description">tr|O35455|O35455_MOUSE Homeobox protein Nkx2.6 (Fragment) OS=Mus musculus GN=Nkx2-6 PE=2 SV=1</note>
799 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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805 </peptide>
806 </protein>
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809 <protein expect="0.0" id="73.1" uid="1" label="tr|O70238|O70238_MOUSE Homeobox protein PSX OS=Mus musculus GN=Rhox6 PE=2 SV=2" sumI="4.64" >
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811 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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813
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816 </peptide>
817 </protein>
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822 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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831 <protein expect="0.0" id="75.1" uid="10" label="sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2..." sumI="4.73" >
832 <note label="description">sp|O35767|NKX25_RAT Homeobox protein Nkx-2.5 OS=Rattus norvegicus GN=Nkx2-5 PE=2 SV=1</note>
833 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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846
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855 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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857
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864 <protein expect="0.0" id="80.1" uid="3" label="sp|P34663|HM23_CAEEL Homeobox protein ceh-23 OS=Caenorhabditis elegans GN=ceh-23..." sumI="4.61" >
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866 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
867 <peptide start="1" end="305">
868
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871 </peptide>
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874 <group id="81" mh="1567.804804" z="2" rt="" expect="1.5e-01" label="sp|Q04787|BSH_DROME Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh..." type="model" sumI="3.68" maxI="541" fI="5.41" act="0" >
875 <protein expect="0.0" id="81.1" uid="25" label="sp|Q04787|BSH_DROME Brain-specific homeobox protein OS=Drosophila melanogaster GN=bsh..." sumI="4.61" >
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877 <file type="peptide" URL="/Users/icooke/Desktop/iptest/AASequences.fasta"/>
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879
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1140 <note label="timing, initial modelling total (sec)">0.61</note>
1141 <note label="timing, initial modelling/spectrum (sec)">0.0052</note>
1142 <note label="timing, load sequence models (sec)">0.00</note>
1143 <note label="timing, refinement/spectrum (sec)">0.0000</note>
1144 </group>
1145 </bioml>