# HG changeset patch
# User galaxy-australia
# Date 1652917858 0
# Node ID bbef168551fef6bb7f9f4ef10ae1c6fcc7c66b7a
# Parent  29e2df3edf1150071bdf7358082014a461cc7e83
planemo upload for repository https://github.com/iracooke/protk-galaxytools/tree/master/xtandem commit aa789ac01391258aff7a819ebf64a7cbc46730c9

diff -r 29e2df3edf11 -r bbef168551fe tandem.xml
--- a/tandem.xml	Tue Oct 27 01:45:26 2015 -0400
+++ b/tandem.xml	Wed May 18 23:50:58 2022 +0000
@@ -164,7 +164,7 @@
         <param name="allow_multi_isotope_search" type="boolean" label="Allow multi-isotope search" help="This allows peptide candidates in windows around -1 Da and -2 Da from the acquired mass to be considered. Only applicable when the minus/plus window above is set to less than 0.5 Da. Good for accurate-mass instruments for which the reported precursor mass is not corrected to the monoisotopic mass." truevalue="--multi-isotope-search" falsevalue=""/>
     </inputs>
     <outputs>
-        <data format="tandem" name="output" metadata_source="input_file" label="X!Tandem_vs_${database.dbkey if $database.has_key('dbkey') else $database.fasta_file.display_name}.${input_file.display_name}.${input_file.display_name}.tandem"/>
+        <data format="tandem" name="output" metadata_source="input_file" label="X!Tandem_vs_${database.fasta_file.display_name}.${input_file.display_name}.${input_file.display_name}.tandem"/>
     </outputs>
     <tests>
         <!-- Just test that the tool runs and produces vaguely correct output -->
diff -r 29e2df3edf11 -r bbef168551fe tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Oct 27 01:45:26 2015 -0400
+++ b/tool_dependencies.xml	Wed May 18 23:50:58 2022 +0000
@@ -1,9 +1,9 @@
-<?xml version="1.0"?>
+<?xml version="1.0" ?>
 <tool_dependency>
     <package name="protk" version="1.4.3">
-        <repository changeset_revision="991797b02976" name="package_protk_1_4_3" owner="iracooke" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository name="package_protk_1_4_3" owner="iracooke" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="991797b02976"/>
     </package>
     <package name="trans_proteomic_pipeline" version="4.8.0">
-        <repository changeset_revision="a7273394d858" name="package_tpp_4_8_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository name="package_tpp_4_8_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a7273394d858"/>
     </package>
-</tool_dependency>
+</tool_dependency>
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