# HG changeset patch
# User iracooke
# Date 1402917642 14400
# Node ID f9271f6991b1683e0c311c24345842d104f34a76
# Parent  618d74240c7ff7a5c6ec76bcb020f9dda31d23f9
Uploaded

diff -r 618d74240c7f -r f9271f6991b1 tandem_to_pepxml.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tandem_to_pepxml.xml	Mon Jun 16 07:20:42 2014 -0400
@@ -0,0 +1,25 @@
+<tool id="tandem_to_pepxml_1" name="Tandem to pepXML" version="1.0.1">
+	<requirements>
+	    <requirement type="package" version="1.3.0">protk</requirement>
+	    <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement>
+   </requirements>
+
+  <description>Converts a tandem result file to pepXML</description>
+
+<command>
+	tandem_to_pepxml.rb $input_file -o $output 
+</command>
+
+<inputs>
+	<param name="input_file" type="data" format="tandem" multiple="false" label="Input File" help="X!Tandem results file"/>
+</inputs>
+
+<outputs>
+	<data format="raw_pepxml" metadata_source="input_file" name="output" label="${input_file.display_name}.pepXML" />
+</outputs>
+
+<help>
+	Convert X!Tandem results to pepXML
+</help>
+
+</tool>