Mercurial > repos > iss > eurl_vtec_wgs_pt

diff eurl_vtec_wgs_pt.xml @ 1:444b0421bbdc draft

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"planemo upload commit c8533b93fb2816db37887244489cbd6e919fc155"
author iss
date Tue, 22 Mar 2022 08:39:10 +0000
parents c6bab5103a14
children 32b5625795ea
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--- a/eurl_vtec_wgs_pt.xml	Mon Mar 21 15:23:09 2022 +0000
+++ b/eurl_vtec_wgs_pt.xml	Tue Mar 22 08:39:10 2022 +0000
@@ -26,7 +26,8 @@
     <command>
 <![CDATA[
       python
-      $__tool_directory__/EURL_VTEC_WGS_PT.py --log $logfile --output $report_out --contigs $contigs --quast $quast --mlstsevenloci $mlstsevenloci
+      $__tool_directory__/EURL_VTEC_WGS_PT.py --base_url $__app__.config.galaxy_infrastructure_url --log $logfile --output $report_out
+	  --contigs $contigs --quast $quast --mlstsevenloci $mlstsevenloci
       #if str( $library.type ) == "single":
           -1 ${library.input_1} --input1_ext ${library.input_1.ext} --input1_name '${library.input_1.name}' 
           --html1 $html_file_1 --html1_id $__app__.security.encode_id($html_file_1.dataset.id) --html1_path ${html_file_1.files_path}