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view scripts/modules/seq_conf/escherichia_coli/typing.config @ 5:fd9093b9368f draft

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planemo upload commit 9af296d380b81335353ebfb8bb6de831e1fbebe1
author iss
date Thu, 19 Oct 2023 20:27:22 +0000
parents c6bab5103a14
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#reference_file (fasta file full path)
escherichia_coli.fasta
#length_extra_seq (int)
0
#maximum_number_absent_genes (int)
1
#maximum_number_genes_multiple_alleles (int)
1
#minimum_read_coverage (x, int)
25
#minimum_depth_presence (x, int)
5
#minimum_depth_call (x, int)
10
#minimum_depth_frequency_dominant_allele (0-1, double)
0.60
#minimum_gene_coverage (0-100, int)
60
#minimum_gene_identity (0-100, int)
70