Mercurial > repos > iss > eurl_vtec_wgs_pt
view scripts/modules/seq_conf/escherichia_coli/typing.config @ 5:fd9093b9368f draft
planemo upload commit 9af296d380b81335353ebfb8bb6de831e1fbebe1
author | iss |
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date | Thu, 19 Oct 2023 20:27:22 +0000 |
parents | c6bab5103a14 |
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#reference_file (fasta file full path) escherichia_coli.fasta #length_extra_seq (int) 0 #maximum_number_absent_genes (int) 1 #maximum_number_genes_multiple_alleles (int) 1 #minimum_read_coverage (x, int) 25 #minimum_depth_presence (x, int) 5 #minimum_depth_call (x, int) 10 #minimum_depth_frequency_dominant_allele (0-1, double) 0.60 #minimum_gene_coverage (0-100, int) 60 #minimum_gene_identity (0-100, int) 70