# HG changeset patch
# User iss
# Date 1697747242 0
# Node ID fd9093b9368f759651fe7856ba2ffcfda2c9d454
# Parent  32b5625795eada32dfbca14ec87694fb18c95850
planemo upload commit 9af296d380b81335353ebfb8bb6de831e1fbebe1

diff -r 32b5625795ea -r fd9093b9368f EURL_VTEC_WGS_PT.py
--- a/EURL_VTEC_WGS_PT.py	Thu Oct 19 19:07:24 2023 +0000
+++ b/EURL_VTEC_WGS_PT.py	Thu Oct 19 20:27:22 2023 +0000
@@ -121,7 +121,7 @@
         log.write("parameters: minGeneCoverage=90, minGeneIdentity=90, minGeneDepth=15\n\n")
         log.write(os.popen("cat " +  TOOL_DIR + "/data/ViruloTyping_db.txt").read())
     # SEQUENCETYPER
-    subprocess.call("mlst --legacy --scheme ecoli_4 " + args.contigs + " | cut -f3,4,5,6,7,8,9,10 > " + args.mlstsevenloci, shell=True)
+    subprocess.call("mlst --legacy --scheme ecoli_achtman_4 " + args.contigs + " | cut -f3,4,5,6,7,8,9,10 > " + args.mlstsevenloci, shell=True)
     sequence_typing = openFileAsTable(args.mlstsevenloci)
     log.write("\n\nSequence Typer\n==============\n")
     log.write(os.popen("mlst -v").read())