Mercurial > repos > iuc > abricate

comparison test-data/output_noheader.txt @ 7:4efdca267d51 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 6535538b7767c3bbe20ac7e89b682154b595c932"
author iuc
date Tue, 29 Oct 2019 19:24:59 -0400
parents 1bb2ba6d3d96
children b734db305578
comparison
equal deleted inserted replaced
6:1bb2ba6d3d96 7:4efdca267d51
1 MRSA0252.fna gi|49482253|ref|NC_002952.2| 40786 41556 aadD_1 1-771/771 =============== 0/0 100.00 99.74 resfinder AF181950 Alternate name; ant(4')-Ia and aadD2 1 MRSA0252.fna gi|49482253|ref|NC_002952.2| 40786 41556 - aadD_1 1-771/771 =============== 0/0 100.00 99.74 resfinder AF181950 aadD Amikacin;Tobramycin
2 MRSA0252.fna gi|49482253|ref|NC_002952.2| 44919 46925 mecA_6 1-2007/2007 =============== 0/0 100.00 100.00 resfinder BX571856 mecA_6 2 MRSA0252.fna gi|49482253|ref|NC_002952.2| 44919 46925 - mecA_6 1-2007/2007 =============== 0/0 100.00 100.00 resfinder BX571856 mecA Amoxicillin;Amoxicillin+Clavulanic_acid;Ampicillin;Ampicillin+Clavulanic_acid;Cefepime;Cefixime;Cefotaxime;Cefoxitin;Ceftazidime;Ertapenem;Imipenem;Meropenem;Piperacillin;Piperacillin+Tazobactam
3 MRSA0252.fna gi|49482253|ref|NC_002952.2| 55890 56621 erm(A)_1 1-732/732 =============== 0/0 100.00 100.00 resfinder X03216 erm(A)_1 3 MRSA0252.fna gi|49482253|ref|NC_002952.2| 55890 56621 + erm(A)_1 1-732/732 =============== 0/0 100.00 100.00 resfinder X03216 erm(A) Erythromycin;Lincomycin;Clindamycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
4 MRSA0252.fna gi|49482253|ref|NC_002952.2| 56747 57529 ant(9)-Ia_1 1-783/783 =============== 0/0 100.00 100.00 resfinder X02588 ant(9)-Ia_1 4 MRSA0252.fna gi|49482253|ref|NC_002952.2| 56747 57529 - ant(9)-Ia_1 1-783/783 =============== 0/0 100.00 100.00 resfinder X02588 ant(9)-Ia
5 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1796513 1797244 erm(A)_1 1-732/732 =============== 0/0 100.00 100.00 resfinder X03216 erm(A)_1 5 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1796513 1797244 + erm(A)_1 1-732/732 =============== 0/0 100.00 100.00 resfinder X03216 erm(A) Erythromycin;Lincomycin;Clindamycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S
6 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1797370 1798152 ant(9)-Ia_1 1-783/783 =============== 0/0 100.00 100.00 resfinder X02588 ant(9)-Ia_1 6 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1797370 1798152 - ant(9)-Ia_1 1-783/783 =============== 0/0 100.00 100.00 resfinder X02588 ant(9)-Ia
7 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1913785 1914672 blaZ_78 1-888/888 =============== 0/0 100.00 99.66 resfinder KU607301 blaZ_78 7 MRSA0252.fna gi|49482253|ref|NC_002952.2| 1913785 1914672 + blaZ_78 1-888/888 =============== 0/0 100.00 99.66 resfinder KU607301 blaZ Amoxicillin;Ampicillin;Penicillin;Piperacillin
8 MRSA0252.fna gi|49482253|ref|NC_002952.2| 2488459 2488878 fosD_1 1-420/420 =============== 0/0 100.00 79.05 resfinder KC989517 fosD_1 8 MRSA0252.fna gi|49482253|ref|NC_002952.2| 2488459 2488878 + fosD_1 1-420/420 =============== 0/0 100.00 79.05 resfinder KC989517 fosD Fosfomycin