Mercurial > repos > iuc > adapter_removal
comparison macros.xml @ 0:04d05400d3a6 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/adapter_removal/ commit 138d7e0d844a783f1e8100d264d57540199f290f"
author | iuc |
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date | Wed, 04 May 2022 13:45:52 +0000 |
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-1:000000000000 | 0:04d05400d3a6 |
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1 <macros> | |
2 <token name="@TOOL_VERSION@">2.3.3</token> | |
3 <token name="@VERSION_SUFFIX@">0</token> | |
4 <token name="@PROFILE@">20.09</token> | |
5 <token name="@DATATYPES@">fastqsanger.gz,fastqsanger</token> | |
6 <xml name="bio_tools"> | |
7 <xrefs> | |
8 <xref type="bio.tools">adapterremoval</xref> | |
9 </xrefs> | |
10 </xml> | |
11 <xml name="requirements"> | |
12 <requirements> | |
13 <requirement type="package" version="@TOOL_VERSION@">adapterremoval</requirement> | |
14 </requirements> | |
15 </xml> | |
16 <xml name="interleaved_output_param"> | |
17 <param argument="--interleaved_output" type="select" label="Write paired-end reads to a single file, interleaving mate 1 and mate 2 reads?"> | |
18 <option value="no" selected="true">No</option> | |
19 <option value="yes">Yes</option> | |
20 </param> | |
21 </xml> | |
22 <xml name="identify_adapters_param"> | |
23 <param argument="--identify_adapters" type="boolean" truevalue="--identify-adapters" falsevalue="" checked="false" label="Attempt to build a consensus adapter sequence from fully overlapping pairs of paired-end reads?" help="No trimming is performed in this mode"/> | |
24 </xml> | |
25 <xml name="combined_output_param"> | |
26 <param argument="--combined_output" type="boolean" truevalue="--combined-output" falsevalue="" checked="false" label="Output trimmed reads such that the sequences of reads discarded due to quality filters or read merging are replaced with a single 'N' with Phred score 0?"/> | |
27 </xml> | |
28 <xml name="sanitizer"> | |
29 <sanitizer> | |
30 <valid initial="string.printable"> | |
31 <remove value="'" /> | |
32 </valid> | |
33 <mapping initial="none"> | |
34 <add source="'" target="__sq__"/> | |
35 </mapping> | |
36 </sanitizer> | |
37 </xml> | |
38 <xml name="citations"> | |
39 <citations> | |
40 <citation type="doi">10.1186/s13104-016-1900-2</citation> | |
41 </citations> | |
42 </xml> | |
43 </macros> | |
44 |