diff macros.xml @ 0:04d05400d3a6 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/adapter_removal/ commit 138d7e0d844a783f1e8100d264d57540199f290f"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Wed May 04 13:45:52 2022 +0000
@@ -0,0 +1,44 @@
+<macros>
+    <token name="@TOOL_VERSION@">2.3.3</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">20.09</token>
+    <token name="@DATATYPES@">fastqsanger.gz,fastqsanger</token>
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">adapterremoval</xref>
+        </xrefs>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">adapterremoval</requirement>
+        </requirements>
+    </xml>
+    <xml name="interleaved_output_param">
+        <param argument="--interleaved_output" type="select" label="Write paired-end reads to a single file, interleaving mate 1 and mate 2 reads?">
+            <option value="no" selected="true">No</option>
+            <option value="yes">Yes</option>
+        </param>
+    </xml>
+    <xml name="identify_adapters_param">
+        <param argument="--identify_adapters" type="boolean" truevalue="--identify-adapters" falsevalue="" checked="false" label="Attempt to build a consensus adapter sequence from fully overlapping pairs of paired-end reads?" help="No trimming is performed in this mode"/>
+    </xml>
+    <xml name="combined_output_param">
+        <param argument="--combined_output" type="boolean" truevalue="--combined-output" falsevalue="" checked="false" label="Output trimmed reads such that the sequences of reads discarded due to quality filters or read merging are replaced with a single 'N' with Phred score 0?"/>
+    </xml>
+    <xml name="sanitizer">
+        <sanitizer>
+            <valid initial="string.printable">
+                <remove value="&apos;" />
+            </valid>
+            <mapping initial="none">
+                <add source="&apos;" target="__sq__"/>
+            </mapping>
+        </sanitizer>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1186/s13104-016-1900-2</citation>
+        </citations>
+    </xml>
+</macros>
+